AICES Graduate School, RWTH Aachen University, Schinkelstr. 2, 52062 Aachen, Germany.
J Chem Phys. 2014 Jan 14;140(2):024105. doi: 10.1063/1.4857735.
We have extended the multilevel summation (MLS) method, originally developed to evaluate long-range Coulombic interactions in molecular dynamics simulations [R. D. Skeel, I. Tezcan, and D. J. Hardy, J. Comput. Chem. 23, 673 (2002)], to handle dispersion interactions. While dispersion potentials are formally short-ranged, accurate calculation of forces and energies in interfacial and inhomogeneous systems require long-range methods. The MLS method offers some significant advantages compared to the particle-particle particle-mesh and smooth particle mesh Ewald methods. Unlike mesh-based Ewald methods, MLS does not use fast Fourier transforms and is thus not limited by communication and bandwidth concerns. In addition, it scales linearly in the number of particles, as compared with the O(NlogN) complexity of the mesh-based Ewald methods. While the structure of the MLS method is invariant for different potentials, every algorithmic step had to be adapted to accommodate the r(-6) form of the dispersion interactions. In addition, we have derived error bounds, similar to those obtained by Hardy ["Multilevel summation for the fast evaluation of forces for the simulation of biomolecules," Ph.D. thesis, University of Illinois at Urbana-Champaign, 2006] for the electrostatic MLS. Using a prototype implementation, we have demonstrated the linear scaling of the MLS method for dispersion, and present results establishing the accuracy and efficiency of the method.
我们扩展了多层求和(MLS)方法,该方法最初是为了评估分子动力学模拟中的长程库仑相互作用而开发的[R. D. Skeel、I. Tezcan 和 D. J. Hardy,J. Comput. Chem. 23, 673 (2002)],以处理色散相互作用。虽然色散势能在形式上是短程的,但在界面和不均匀系统中准确计算力和能量需要长程方法。与粒子-粒子-粒子网格和光滑粒子网格 Ewald 方法相比,MLS 方法具有一些显著的优势。与基于网格的 Ewald 方法不同,MLS 不使用快速傅里叶变换,因此不受通信和带宽问题的限制。此外,与基于网格的 Ewald 方法的 O(NlogN)复杂度相比,它在线性上与粒子数量成比例。虽然 MLS 方法的结构对于不同的势能是不变的,但每个算法步骤都必须进行调整以适应色散相互作用的 r(-6)形式。此外,我们已经推导出类似于 Hardy ["Multilevel summation for the fast evaluation of forces for the simulation of biomolecules," Ph.D. thesis, University of Illinois at Urbana-Champaign, 2006] 获得的静电 MLS 的误差界。使用原型实现,我们证明了 MLS 方法在色散方面的线性缩放,并展示了确定该方法的准确性和效率的结果。