Fennell Christopher J, Gezelter J Daniel
Department of Chemistry/Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA.
J Chem Phys. 2006 Jun 21;124(23):234104. doi: 10.1063/1.2206581.
We investigate pairwise electrostatic interaction methods and show that there are viable computationally efficient (O(N)) alternatives to the Ewald summation for typical modern molecular simulations. These methods are extended from the damped and cutoff-neutralized Coulombic sum originally proposed by Wolf et al. [J. Chem. Phys. 110, 8255 (1999)]. One of these, the damped shifted force method, shows a remarkable ability to reproduce the energetic and dynamic characteristics exhibited by simulations employing lattice summation techniques. Comparisons were performed with this and other pairwise methods against the smooth particle-mesh Ewald summation to see how well they reproduce the energetics and dynamics of a variety of molecular simulations.
我们研究了成对静电相互作用方法,并表明对于典型的现代分子模拟,存在可行的计算效率高(O(N))的替代方法来替代埃瓦尔德求和。这些方法是从Wolf等人最初提出的阻尼和截止中和库仑和扩展而来的[《化学物理杂志》110, 8255 (1999)]。其中一种方法,即阻尼移位力方法,在再现采用晶格求和技术的模拟所展现的能量和动力学特征方面表现出显著能力。将该方法及其他成对方法与光滑粒子网格埃瓦尔德求和进行了比较,以了解它们在再现各种分子模拟的能量学和动力学方面的表现如何。