School of Chemistry and Biochemistry, The University of Western Australia , 35 Stirling Highway, Crawley, WA 6009, Australia.
Biochemistry. 2014 Feb 18;53(6):1051-8. doi: 10.1021/bi4016814. Epub 2014 Feb 5.
His216 is a well-conserved residue in pyruvate carboxylases and, on the basis of structures of the enzyme, appears to have a role in the binding of MgATP, forming an interaction with the 3'-hydroxyl group of the ribose ring. Mutation of this residue to asparagine results in a 9-fold increase in the Km for MgATP in its steady-state cleavage in the absence of pyruvate and a 3-fold increase in the Km for MgADP in its steady-state phosphorylation by carbamoyl phosphate. However, from single-turnover experiments of MgATP cleavage, the Kd of the enzyme·MgATP complex is essentially the same in the wild-type enzyme and H216N. Direct stopped-flow measurements of nucleotide binding and release using the fluorescent analogue FTP support these observations. However, the first-order rate constant for MgATP cleavage in the single-turnover experiments in H216N is only 0.75% of that for the wild-type enzyme, and thus, the MgATP cleavage step is rate-limiting in the steady state for H216N but not for the wild-type enzyme. Close examination of the structure of the enzyme suggested that His216 may also interact with Glu218, which in turn interacts with Glu305 to form a proton relay system involved in the deprotonation of bicarbonate. Single-turnover MgATP cleavage experiments with mutations of these two residues resulted in kinetic parameters similar to those observed in H216N. We suggest that the primary role of His216 is to coordinate the binding of MgATP and the deprotonation of bicarbonate in the reaction to form the putative carboxyphosphate intermediate by participation in a proton relay system involving Glu218 and Glu305.
His216 是丙酮酸羧化酶中高度保守的残基,根据该酶的结构,它似乎在结合 MgATP 方面发挥作用,与核糖环的 3'-羟基形成相互作用。该残基突变为天冬酰胺会导致无丙酮酸时稳态裂解中 MgATP 的 Km 值增加 9 倍,而稳态磷酸化时由氨甲酰磷酸引起的 MgADP 的 Km 值增加 3 倍。然而,从 MgATP 裂解的单次转换实验来看,野生型酶和 H216N 中酶·MgATP 复合物的 Kd 基本相同。使用荧光类似物 FTP 进行的核苷酸结合和释放的直接停流测量支持了这些观察结果。然而,H216N 中单次转换实验中 MgATP 裂解的一级速率常数仅为野生型酶的 0.75%,因此,MgATP 裂解步骤在 H216N 中是稳态的限速步骤,但在野生型酶中不是。对酶结构的仔细检查表明,His216 还可能与 Glu218 相互作用,而 Glu218 又与 Glu305 相互作用,形成参与重碳酸根去质子化的质子传递系统。这两个残基的突变体的单次转换 MgATP 裂解实验导致的动力学参数与在 H216N 中观察到的相似。我们认为 His216 的主要作用是通过参与涉及 Glu218 和 Glu305 的质子传递系统来协调 MgATP 的结合和重碳酸根的去质子化,从而形成假定的羧基磷酸中间物。