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微生物组:揭开微生物群落在生物圈中作用的神秘面纱。

Microbiome, demystifying the role of microbial communities in the biosphere.

出版信息

Microbiome. 2013 Jan 9;1(1):1. doi: 10.1186/2049-2618-1-1.

Abstract

The backstory to the motivation for launching Microbiome is a tale of two subdisciplines finding philosophical common ground fueled by substantial technological advancements in DNA sequencing and analysis. Until recently it was possible to neatly divide microbiology into two largely exclusive subdisciplines: clinical microbiology and environmental microbiology. Guided by Koch's postulates for more than a century, clinical microbiologists have excelled in connecting specific microorganisms with disease in animals and plants, and through basic research have suppressed infectious diseases - saving countless lives through disease treatment and prevention and greater food security. Motivated initially by the desire to exploit the biochemical capabilities of microorganisms, environmental microbiologists have uncovered the large diversity of physiological capabilities that allow microorganisms to thrive wherever there exists sufficient free energy to sustain a proton gradient and feed essential biochemical pathways with reducing power. Emergent from these research activities was the discovery of extraordinary diversity of microbial life on Earth that has forever altered our perception of the tree of life. A look back at the five-kingdoms tree illustrated on the inside cover of a circa 1984 freshman biology textbook is clear evidence of how far we have come in our appreciation of microbial diversity; new understanding made possible through basic environmental microbiology research.

摘要

启动 Microbiome 的动机可以追溯到两个子学科的故事,它们在 DNA 测序和分析技术的实质性进步的推动下找到了哲学上的共同点。直到最近,人们还可以将微生物学 neatly 地分为两个截然不同的子学科:临床微生物学和环境微生物学。在科赫假设的指导下,临床微生物学家在将特定微生物与动植物疾病联系起来方面表现出色,并通过基础研究抑制了传染病——通过疾病治疗和预防以及更大的食品安全挽救了无数生命。最初是出于利用微生物生化能力的愿望,环境微生物学家揭示了微生物在任何存在足够自由能维持质子梯度并为必需生化途径提供还原力的地方茁壮成长的大量生理能力。这些研究活动产生了对地球上微生物生命非凡多样性的发现,这彻底改变了我们对生命之树的看法。回顾一下大约在 1984 年新生生物学教科书中内页插图的五界树,可以清楚地证明我们在微生物多样性方面已经取得了多大的进展;这是通过基础环境微生物学研究实现的新认识。

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