Rajpathak Shriram N, Banerjee Roumik, Mishra Pawan G, Khedkar Asmita M, Patil Yugandhara M, Joshi Suraj R, Deobagkar Deepti D
Molecular Biology Research Laboratory, Centre for Advanced Studies, Department of Zoology, Savitribai Phule Pune University, Pune 411 007, India.
J Biosci. 2018 Sep;43(4):635-648.
Depletion of oxygen in certain marine areas creates oxygen minimum zones (OMZs), which can alter the species composition and abundance. We have carried out high-throughput 16S rRNA gene amplicon profiling from the Bay of Bengal (BOB) OMZ and non-OMZ areas. Typically, a total of 35 families of micro-organisms were identified as biomarkers for OMZ and non-OMZ regions in the BOB. Our analysis has identified families Pseudoalteromonadaceae, OM60 and Synechococcaceae to be abundant in oxygenated water, whereas organisms belonging to families Pelagibacteraceae and Caulobacteraceae, which are involved in sulphur and nitrogen metabolism, were prominent in the OMZ areas. Predictive functional analysis for these identified bacteria clearly that suggested an abundance of microbes with assimilatory sulphurreducing genes (cysl and csH) in the non-OMZ, while bacteria involved in dissimilatory sulphate reduction (known to carry aprA and aprB genes) were enriched in the OMZ areas. Comparative analysis with OMZ areas from Peru and Chile revealed that OMZ areas in the BOB are characterized by specific and distinctive bacterial diversity. Overall, the current analysis provides valuable documentation about the bacterial populations and their characteristics, which can generate pointers for their functional significance in the BOB.
某些海洋区域的氧气消耗会形成氧含量极低区域(OMZ),这会改变物种组成和丰度。我们对孟加拉湾(BOB)的氧含量极低区域和非氧含量极低区域进行了高通量16S rRNA基因扩增子分析。通常,总共35个微生物科被确定为孟加拉湾氧含量极低区域和非氧含量极低区域的生物标志物。我们的分析确定,假交替单胞菌科、OM60和聚球藻科在含氧水中数量丰富,而参与硫和氮代谢的浮霉菌科和柄杆菌科的生物在氧含量极低区域较为突出。对这些已鉴定细菌的预测功能分析清楚地表明,在非氧含量极低区域,具有同化性硫还原基因(cysl和csH)的微生物数量众多,而参与异化性硫酸盐还原(已知携带aprA和aprB基因)的细菌在氧含量极低区域更为富集。与秘鲁和智利的氧含量极低区域进行比较分析发现,孟加拉湾的氧含量极低区域具有特定且独特的细菌多样性。总体而言,当前的分析提供了有关细菌种群及其特征的宝贵记录,可为它们在孟加拉湾的功能意义提供线索。