Borana Mohanish S, Mishra Pushpa, Pissurlenkar Raghuvir R S, Hosur Ramakrishna V, Ahmad Basir
Department of Chemistry, UM-DAE Centre for Excellence in Basic Sciences, University of Mumbai, Vidhyanagari Campus, Mumbai 400098, India.
Department of Chemical Sciences, Tata Institute of Fundamental Research, Mumbai, India.
Biochim Biophys Acta. 2014 Mar;1844(3):670-80. doi: 10.1016/j.bbapap.2014.01.009. Epub 2014 Jan 24.
Interaction of small molecule inhibitors with protein aggregates has been studied extensively, but how these inhibitors modulate aggregation kinetic parameters is little understood. In this work, we investigated the ability of two potential aggregation inhibiting drugs, curcumin and kaempferol, to control the kinetic parameters of aggregation reaction. Using thioflavin T fluorescence and static light scattering, the kinetic parameters such as amplitude, elongation rate constant and lag time of guanidine hydrochloride-induced aggregation reactions of hen egg white lysozyme were studied. We observed a contrasting effect of inhibitors on the kinetic parameters when aggregation reactions were measured by these two probes. The interactions of these inhibitors with hen egg white lysozyme were investigated using fluorescence quench titration method and molecular dynamics simulations coupled with binding free energy calculations. We conclude that both the inhibitors prolong nucleation of amyloid aggregation through binding to region of the protein which is known to form the core of the protein fibril, but once the nucleus is formed the rate of elongation is not affected by the inhibitors. This work would provide insight into the mechanism of aggregation inhibition by these potential drug molecules.
小分子抑制剂与蛋白质聚集体的相互作用已得到广泛研究,但这些抑制剂如何调节聚集动力学参数却鲜为人知。在这项工作中,我们研究了两种潜在的聚集抑制药物姜黄素和山奈酚控制聚集反应动力学参数的能力。利用硫黄素T荧光和静态光散射,研究了盐酸胍诱导的鸡蛋清溶菌酶聚集反应的动力学参数,如振幅、伸长率常数和滞后时间。当用这两种探针测量聚集反应时,我们观察到抑制剂对动力学参数有相反的影响。利用荧光猝灭滴定法、分子动力学模拟以及结合自由能计算,研究了这些抑制剂与鸡蛋清溶菌酶的相互作用。我们得出结论,两种抑制剂均通过与已知形成蛋白质原纤维核心的蛋白质区域结合来延长淀粉样聚集的成核过程,但一旦核形成,伸长速率不受抑制剂影响。这项工作将为这些潜在药物分子的聚集抑制机制提供深入见解。