Laboratory of Organic Chemistry, ETH-Zürich , Zürich CH-8093, Switzerland.
Biochemistry. 2014 Feb 11;53(5):836-45. doi: 10.1021/bi401667f. Epub 2014 Jan 31.
Although more than 10(9) years have passed since the existence of the last universal common ancestor, proteins have yet to reach the limits of divergence. As a result, metabolic complexity is ever expanding. Identifying and understanding the mechanisms that drive and limit the divergence of protein sequence space impact not only evolutionary biologists investigating molecular evolution but also synthetic biologists seeking to design useful catalysts and engineer novel metabolic pathways. Investigations over the past 50 years indicate that the recruitment of enzymes for new functions is a key event in the acquisition of new metabolic capacity. In this review, we outline the genetic mechanisms that enable recruitment and summarize the present state of knowledge regarding the functional characteristics of extant catalysts that facilitate recruitment. We also highlight recent examples of enzyme recruitment, both from the historical record provided by phylogenetics and from enzyme evolution experiments. We conclude with a look to the future, which promises fruitful consequences from the convergence of molecular evolutionary theory, laboratory-directed evolution, and synthetic biology.
虽然最后一个共同祖先已经存在了 10 年以上,但蛋白质仍未达到分歧的极限。因此,代谢复杂性在不断扩大。识别和理解驱动和限制蛋白质序列空间分歧的机制,不仅影响着研究分子进化的进化生物学家,也影响着试图设计有用催化剂和工程新代谢途径的合成生物学家。过去 50 年的研究表明,酶的新功能招募是获得新代谢能力的关键事件。在这篇综述中,我们概述了能够实现招募的遗传机制,并总结了目前关于促进招募的现有催化剂功能特征的知识状况。我们还强调了酶招募的最新实例,既有来自系统发育学提供的历史记录,也有来自酶进化实验的实例。最后,我们展望未来,分子进化理论、实验室定向进化和合成生物学的融合有望带来丰硕的成果。