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半同胞家系中绵羊脂肪酸结合蛋白4(FABP4)基因两种以上父本单倍型的鉴定:基因内减数分裂重组的证据

Identification of more than two paternal haplotypes of the ovine fatty acid-binding protein 4 (FABP4) gene in half-sib families: evidence of intragenic meiotic recombination.

作者信息

Yan Wei, Zhou Huitong, Luo Yuzhu, Hu Jiang, Hickford Jon G H

机构信息

Gansu Key Laboratory of Herbivorous Animal Biotechnology, Faculty of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.

Gene-Marker Laboratory, Faculty of Agriculture and Life Sciences, Lincoln University, Lincoln, New Zealand.

出版信息

PLoS One. 2014 Feb 11;9(2):e88691. doi: 10.1371/journal.pone.0088691. eCollection 2014.

DOI:10.1371/journal.pone.0088691
PMID:24523930
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3921221/
Abstract

The fatty acid binding protein 4 (FABP4) plays an important role in the regulation of lipid metabolism in mammals. In this study, two regions of ovine FABP4 spanning exon 2-intron 2 and exon 3-intron 3 were investigated in four hundred and twenty lambs derived from seven sires that were previously typed as having heterozygous genotypes in both these regions of the gene. These regions have been shown to be variable, with three SNPs plus one indel and four SNPs respectively constituting five and four allele variants in the two regions. Across these regions, fourteen haplotypes have been identified. The lambs were typed using a Polymerase Chain Reaction Single-Stranded Conformational Polymorphism (PCR-SSCP) method to identify the haplotypes inherited from the sires. Between three and four paternally-derived haplotypes were identified in the progeny of six of the seven sires, suggesting that meiotic recombination occurs within ovine FABP4. A number of sequence motifs associated with recombination "hotspots" were detected in the two regions of the gene that were analyzed and these may facilitate the recombination.

摘要

脂肪酸结合蛋白4(FABP4)在哺乳动物脂质代谢调节中发挥重要作用。在本研究中,对来自7只公羊的420只羔羊的绵羊FABP4跨越外显子2-内含子2和外显子3-内含子3的两个区域进行了研究,这7只公羊先前在该基因的这两个区域被鉴定为杂合基因型。这些区域已被证明是可变的,在这两个区域中分别有3个单核苷酸多态性(SNP)加上1个插入缺失和4个SNP,分别构成5个和4个等位基因变体。在这些区域中,已鉴定出14种单倍型。使用聚合酶链反应单链构象多态性(PCR-SSCP)方法对羔羊进行分型,以鉴定从公羊遗传而来的单倍型。在7只公羊中的6只公羊的后代中鉴定出3至4种父本来源的单倍型,这表明减数分裂重组发生在绵羊FABP4内。在分析的基因的两个区域中检测到一些与重组“热点”相关的序列基序,这些可能促进重组。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2db/3921221/fc10928a2c5d/pone.0088691.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2db/3921221/a03821f891eb/pone.0088691.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2db/3921221/fc10928a2c5d/pone.0088691.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2db/3921221/a03821f891eb/pone.0088691.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2db/3921221/fc10928a2c5d/pone.0088691.g002.jpg

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本文引用的文献

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Mol Biol Rep. 2012 Dec;39(12):10621-5. doi: 10.1007/s11033-012-1951-y. Epub 2012 Oct 20.
2
A genomics-informed, SNP association study reveals FBLN1 and FABP4 as contributing to resistance to fleece rot in Australian Merino sheep.基于基因组信息的 SNP 关联研究揭示 FBLN1 和 FABP4 有助于澳大利亚美利奴羊对羊毛旋毛虫病的抗性。
BMC Vet Res. 2010 May 26;6:27. doi: 10.1186/1746-6148-6-27.
3
Genetic polymorphisms of the bovine fatty acid binding protein 4 gene are significantly associated with marbling and carcass weight in Hanwoo (Korean Cattle).
牛脂肪酸结合蛋白 4 基因的遗传多态性与韩牛(韩国牛)大理石花纹和胴体重量显著相关。
Anim Genet. 2010 Aug;41(4):442-4. doi: 10.1111/j.1365-2052.2010.02024.x. Epub 2010 Mar 15.
4
A splice site single nucleotide polymorphism of the fatty acid binding protein 4 gene appears to be associated with intramuscular fat deposition in longissimus muscle in Australian cattle.脂肪酸结合蛋白 4 基因的剪接位点单核苷酸多态性似乎与澳大利亚牛的背最长肌肌内脂肪沉积有关。
Anim Genet. 2009 Oct;40(5):770-3. doi: 10.1111/j.1365-2052.2009.01913.x. Epub 2009 May 16.
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Novel nucleotide sequence motifs that produce hotspots of meiotic recombination in Schizosaccharomyces pombe.在粟酒裂殖酵母中产生减数分裂重组热点的新型核苷酸序列基序。
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