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一种基于DNA链置换的新型诊断方法。

A novel diagnostic method based on DNA strand displacement.

作者信息

Collins M, Fritsch E F, Ellwood M S, Diamond S E, Williams J I, Brewen J G

机构信息

Genetics Institute, Cambridge, Massachusetts.

出版信息

Mol Cell Probes. 1988 Mar;2(1):15-30. doi: 10.1016/0890-8508(88)90040-0.

DOI:10.1016/0890-8508(88)90040-0
PMID:2454401
Abstract

A novel approach for the detection of specific DNA or RNA sequences based on branch migration and DNA strand displacement is described. A partially double-stranded probe complex is prepared with a detectable label on one of the two strands and incubated with analyte molecules under hybridization conditions. The analyte molecules hybridize to the single-stranded portion of the probe complex and undergo branch migration to release the labelled DNA strand from the complex. Initial characterization of the assay indicates that both qualitative and quantitative information about analytes present in a sample can be obtained. The strand displacement assay is more sensitive to sequence alterations in the analyte than is a hybridization assay and can be promoted by rec A protein at 37 degrees C. Finally, a method for preparing probe complexes by cloning in a single-stranded DNA vector is also described.

摘要

描述了一种基于分支迁移和DNA链置换检测特定DNA或RNA序列的新方法。制备一种部分双链探针复合物,其中两条链之一带有可检测标记,并在杂交条件下与分析物分子一起孵育。分析物分子与探针复合物的单链部分杂交,并发生分支迁移以从复合物中释放标记的DNA链。该检测方法的初步表征表明,可以获得关于样品中存在的分析物的定性和定量信息。与杂交检测相比,链置换检测对分析物中的序列改变更敏感,并且可以在37℃下由Rec A蛋白促进。最后,还描述了一种通过在单链DNA载体中克隆来制备探针复合物的方法。

相似文献

1
A novel diagnostic method based on DNA strand displacement.一种基于DNA链置换的新型诊断方法。
Mol Cell Probes. 1988 Mar;2(1):15-30. doi: 10.1016/0890-8508(88)90040-0.
2
Strand displacement applied to assays with nucleic acid probes.链置换应用于核酸探针分析。
Clin Chem. 1986 Sep;32(9):1631-6.
3
Molecular-beacon-based tricomponent probe for SNP analysis in folded nucleic acids.基于分子信标的三组分探针用于折叠核酸中的 SNP 分析。
Chemistry. 2011 Nov 11;17(46):13052-8. doi: 10.1002/chem.201101987. Epub 2011 Sep 28.
4
The synaptic complex of RecA protein participates in hybridization and inverse strand exchange reactions.RecA蛋白的突触复合体参与杂交和反向链交换反应。
Biochemistry. 2003 Mar 11;42(9):2643-55. doi: 10.1021/bi0205202.
5
A homogeneous nucleic acid hybridization assay based on strand displacement.一种基于链置换的均相核酸杂交分析方法。
Nucleic Acids Res. 1987 Sep 11;15(17):6883-97. doi: 10.1093/nar/15.17.6883.
6
RNA facilitates RecA-mediated DNA pairing and strand transfer between molecules bearing limited regions of homology.RNA促进RecA介导的、在具有有限同源区域的分子之间的DNA配对和链转移。
Mol Gen Genet. 1996 Mar 20;250(5):626-34. doi: 10.1007/BF02174450.
7
RNA-DNA hybridization promoted by E. coli RecA protein.由大肠杆菌RecA蛋白促进的RNA-DNA杂交。
Nucleic Acids Res. 1992 Aug 25;20(16):4339-46. doi: 10.1093/nar/20.16.4339.
8
Ability of RecA protein to promote a search for rare sequences in duplex DNA.RecA蛋白促进在双链DNA中寻找稀有序列的能力。
Proc Natl Acad Sci U S A. 1986 Dec;83(24):9586-90. doi: 10.1073/pnas.83.24.9586.
9
Stable three-stranded DNA made by RecA protein.由RecA蛋白形成的稳定三链DNA。
Proc Natl Acad Sci U S A. 1991 Apr 15;88(8):2984-8. doi: 10.1073/pnas.88.8.2984.
10
Characterization of the DNA binding activity of stable RecA-DNA complexes. Interaction between the two DNA binding sites within RecA helical filaments.稳定的RecA-DNA复合物的DNA结合活性表征。RecA螺旋丝内两个DNA结合位点之间的相互作用。
J Mol Biol. 1990 Mar 5;212(1):97-112. doi: 10.1016/0022-2836(90)90307-8.

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Use of subtractive hybridization to design habitat-based oligonucleotide probes for investigation of natural bacterial communities.利用消减杂交技术设计基于生境的寡核苷酸探针以研究自然细菌群落。
Appl Environ Microbiol. 1998 Jan;64(1):185-91. doi: 10.1128/AEM.64.1.185-191.1998.