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非典型放线孢菌新种,一种新型土壤放线菌及对放线孢菌属的修订描述

Actinomycetospora atypica sp. nov., a novel soil actinomycete and emended description of the genus Actinomycetospora.

作者信息

Zhang Yuejing, Liu Chongxi, Zhang Ji, Shen Yue, Li Chuang, He Hairong, Wang Xiangjing, Xiang Wensheng

机构信息

Key Laboratory of Agriculture Biological Functional Gene of Heilongjiang Provincial Education Committee, Northeast Agricultural University, No. 59 Mucai Street, Xiangfang District, Harbin, 150030, People's Republic of China.

出版信息

Antonie Van Leeuwenhoek. 2014 May;105(5):891-7. doi: 10.1007/s10482-014-0143-2. Epub 2014 Feb 27.

Abstract

A novel actinomycete, designated strain NEAU-st4(T), was isolated from a soil sample collected from Shaanxi province, Northwest China and characterized using a polyphasic approach. 16S rRNA gene sequence analysis revealed that strain NEAU-st4(T) has the highest sequence similarities with Actinomycetospora rishiriensis RI109-Li102(T) (99.4 %), Actinomycetospora corticicola 014-5(T) (99.1 %), Actinomycetospora chiangmaiensis YIM 0006(T) (98.8 %) and Actinomycetospora iriomotensis IR73-Li102(T) (98.2 %). However, the low level of DNA-DNA relatedness differentiated strain NEAU-st4(T) from its closest phylogenetic neighbours. The main chemotaxonomic properties of strain NEAU-st4(T), such as the diamino acid of the peptidoglycan, the whole-cell hydrolysates, the predominant menaquinones and the phospholipid profile, supported its classification within the genus Actinomycetospora. The distinctive morphology of this strain compared with that of other members in the genus Actinomycetospora is the formation of sporangia directly on the substrate hyphae. Phenotypic and genotypic differences also allowed the distinction of the strain from closely related species. Consequently, strain NEAU-st4(T) represents a new species of the genus Actinomycetospora, for which the name Actinomycetospora atypica sp. nov. is proposed. The type strain is NEAU-st4(T) (=CGMCC 4.7093(T) = DSM 45873(T)).

摘要

从中国西北陕西省采集的土壤样品中分离出一株新型放线菌,命名为菌株NEAU-st4(T),并采用多相分类法对其进行了表征。16S rRNA基因序列分析表明,菌株NEAU-st4(T)与立山放线孢菌RI109-Li102(T)(99.4%)、皮层放线孢菌014-5(T)(99.1%)、清迈放线孢菌YIM 0006(T)(98.8%)和西表岛放线孢菌IR73-Li102(T)(98.2%)具有最高的序列相似性。然而,低水平的DNA-DNA相关性将菌株NEAU-st4(T)与其最接近的系统发育邻居区分开来。菌株NEAU-st4(T)的主要化学分类学特征,如肽聚糖的二氨基酸、全细胞水解产物、主要甲基萘醌和磷脂谱,支持其在放线孢菌属内的分类。与放线孢菌属其他成员相比,该菌株独特的形态是在基内菌丝上直接形成孢子囊。表型和基因型差异也使该菌株与密切相关的物种区分开来。因此,菌株NEAU-st4(T)代表放线孢菌属的一个新物种,为此提出新名称非典型放线孢菌(Actinomycetospora atypica sp. nov.)。模式菌株为NEAU-st4(T)(=CGMCC 4.7093(T)=DSM 45873(T))。

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