Blanchard Andrew E, Celik Venhar, Lu Ting
Department of Physics, University of Illinois at Urbana-Champaign, 1110 West Green Street, 61801 Urbana, USA.
BMC Syst Biol. 2014 Feb 27;8:23. doi: 10.1186/1752-0509-8-23.
Contact-dependent inhibition (CDI) has been recently revealed as an intriguing but ubiquitous mechanism for bacterial competition in which a species injects toxins into its competitors through direct physical contact for growth suppression. Although the molecular and genetic aspects of CDI systems are being increasingly explored, a quantitative and systematic picture of how CDI systems benefit population competition and hence alter corresponding competition outcomes is not well elucidated.
By constructing a mathematical model for a population consisting of CDI+ and CDI- species, we have systematically investigated the dynamics and possible outcomes of population competition. In the well-mixed case, we found that the two species are mutually exclusive: Competition always results in extinction for one of the two species, with the winner determined by the tradeoff between the competitive benefit of the CDI+ species and its growth disadvantage from increased metabolic burden. Initial conditions in certain circumstances can also alter the outcome of competition. In the spatial case, in addition to exclusive extinction, coexistence and localized patterns may emerge from population competition. For spatial coexistence, population diffusion is also important in influencing the outcome. Using a set of illustrative examples, we further showed that our results hold true when the competition of the population is extended from one to two dimensional space.
We have revealed that the competition of a population with CDI can produce diverse patterns, including extinction, coexistence, and localized aggregation. The emergence, relative abundance, and characteristic features of these patterns are collectively determined by the competitive benefit of CDI and its growth disadvantage for a given rate of population diffusion. Thus, this study provides a systematic and statistical view of CDI-based bacterial population competition, expanding the spectrum of our knowledge about CDI systems and possibly facilitating new experimental tests for a deeper understanding of bacterial interactions.
接触依赖性抑制(CDI)最近被揭示为一种有趣但普遍存在的细菌竞争机制,在这种机制中,一个物种通过直接物理接触将毒素注入其竞争者体内以抑制生长。尽管CDI系统的分子和遗传方面正在得到越来越多的探索,但关于CDI系统如何有利于种群竞争并因此改变相应竞争结果的定量和系统图景尚未得到很好的阐明。
通过构建一个由CDI+和CDI-物种组成的种群的数学模型,我们系统地研究了种群竞争的动态和可能结果。在充分混合的情况下,我们发现这两个物种相互排斥:竞争总是导致两个物种中的一个灭绝,获胜者由CDI+物种的竞争优势与其因代谢负担增加而产生的生长劣势之间的权衡决定。在某些情况下,初始条件也会改变竞争结果。在空间情况下,除了排他性灭绝之外,种群竞争还可能出现共存和局部化模式。对于空间共存,种群扩散在影响结果方面也很重要。通过一组示例,我们进一步表明,当种群竞争从一维空间扩展到二维空间时,我们的结果仍然成立。
我们已经揭示,具有CDI的种群竞争可以产生多种模式,包括灭绝、共存和局部聚集。这些模式的出现、相对丰度和特征由CDI的竞争优势及其在给定种群扩散速率下的生长劣势共同决定。因此,本研究提供了基于CDI的细菌种群竞争的系统和统计观点,扩展了我们对CDI系统的认识范围,并可能促进新的实验测试,以更深入地理解细菌间的相互作用。