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基于活性的蛋白质组学和代谢组学方法用于理解代谢。

Activity-based proteomic and metabolomic approaches for understanding metabolism.

机构信息

Program in Metabolic Biology, University of California, Berkeley, Berkeley, CA 94720, United States.

Program in Metabolic Biology, University of California, Berkeley, Berkeley, CA 94720, United States.

出版信息

Curr Opin Biotechnol. 2014 Aug;28:116-26. doi: 10.1016/j.copbio.2014.02.001. Epub 2014 Mar 13.

Abstract

There are an increasing number of human pathologies that have been associated with altered metabolism, including obesity, diabetes, atherosclerosis, cancer, and neurodegenerative diseases. Most attention on metabolism has been focused on well-understood metabolic pathways and has largely ignored most of the biochemical pathways that operate in (patho)physiological settings, in part because of the vast landscape of uncharacterized and undiscovered metabolic pathways. One technology that has arisen to meet this challenge is activity-based protein profiling (ABPP) that uses activity-based chemical probes to broadly assess the functional states of both characterized and uncharacterized enzymes. This review will focus on how ABPP, coupled with inhibitor discovery platforms and functional metabolomic technologies, have led to discoveries that have expanded our knowledge of metabolism in health and disease.

摘要

越来越多的人类病理学与代谢改变有关,包括肥胖、糖尿病、动脉粥样硬化、癌症和神经退行性疾病。大多数对代谢的关注都集中在已被充分理解的代谢途径上,而在很大程度上忽略了在(病理)生理环境中运作的大多数生化途径,部分原因是因为未被描述和未被发现的代谢途径数量庞大。一种应对这一挑战的技术是基于活性的蛋白质谱分析(ABPP),它使用基于活性的化学探针广泛评估已鉴定和未鉴定酶的功能状态。这篇综述将重点介绍 ABPP 如何与抑制剂发现平台和功能代谢组学技术相结合,推动了对健康和疾病中代谢的认识的扩展。

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