Suppr超能文献

An accurate classical simulation of a two-dimensional vibrational spectrum: OD stretch spectrum of a hydrated HOD molecule.

作者信息

Jeon Jonggu, Cho Minhaeng

机构信息

Department of Chemistry, Korea University , Seoul 136-701, Korea.

出版信息

J Phys Chem B. 2014 Jul 17;118(28):8148-61. doi: 10.1021/jp501182d. Epub 2014 Mar 19.

Abstract

An accurate computational method for the classical simulation of the two-dimensional vibrational spectra is presented. The method refines our previous computational method for the third order vibrational response function in the classical limit, and it enables capturing the diagonal elongation and its waiting time (T) dependence widely observed in experimental two-dimensional infrared (2D IR) spectra of intramolecular modes. The improvement is achieved by a series of new developments including (i) a block algorithm for the stability matrix computation, (ii) new equations of motion for the position-perturbed molecular dynamics (MD) trajectory, and (iii) enhanced sampling efficiency by exploiting the time-reversal invariance of MD trajectories. The method is applied to the simulation of 2D IR spectra of the OD stretch mode in a hydrated HOD molecule, employing a hybrid quantum mechanical/molecular mechanical force field. The simulated spectra exhibit diagonal elongation of the 2D IR signal at small T, reflecting the correlation of individual transitions among the inhomogeneously broadened ensemble. The slopes of the nodal lines of the elongated signals are found to decay with a time scale of 1.6 ps as T increases, in reasonable agreement with the frequency correlation decay time of 1.2 ps. The amplitudes of the positive and negative peaks also decay as T increases, due to vibrational population relaxation and molecular rotation. The peak positions tend to blue shift with increasing T, reflecting the different relaxation rates of the strongly and weakly solvated HOD species. These results indicate that the present method can reliably predict the waiting-time-dependent changes of 2D IR spectra of a single vibrational chromophore in solution.

摘要

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验