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通过整合图谱绘制和表达谱分析对大理石花纹性状进行遗传剖析。

Genetic dissection of marbling trait through integration of mapping and expression profiling.

作者信息

Yamada Takahisa

机构信息

Department of Agrobiology, Faculty of Agriculture, Niigata University, Niigata, Japan.

出版信息

Anim Sci J. 2014 Apr;85(4):349-55. doi: 10.1111/asj.12179. Epub 2014 Feb 26.

Abstract

Marbling traits, defined by the amount of intramuscular fat, has a heritable component and are quantitative in nature, being influenced by many genes of variable individual effects. The identification of the genetic variation associated with marbling is an important step toward the improvement of beef quality through breeding programs and the understanding of the biological network of marbling. A lot of genomic studies based on functional candidate gene approach and quantitative trait locus (QTL) mapping and many transcriptome studies based on expression profiling, respectively, provide information on variation in genomic regions and individual genes associated with marbling and of genes with marbling-associated expression changes. Further, the integrative approach combining mapping and expression profiling data is proving useful for identifying the causal genes for marbling QTLs. Application of this integrative approach to our marbling study using a rat model, Otsuka Long-Evans Tokushima Fatty (OLETF) rat and Japanese Black beef cattle is introduced finally in this review.

摘要

大理石花纹性状由肌内脂肪含量定义,具有遗传成分且本质上是数量性状,受许多具有不同个体效应的基因影响。鉴定与大理石花纹相关的遗传变异是通过育种计划提高牛肉品质以及理解大理石花纹生物学网络的重要一步。许多基于功能候选基因方法和数量性状位点(QTL)定位的基因组研究,以及许多分别基于表达谱分析的转录组研究,提供了与大理石花纹相关的基因组区域和个体基因变异以及具有大理石花纹相关表达变化的基因的信息。此外,将定位和表达谱数据相结合的综合方法已被证明有助于识别大理石花纹QTL的因果基因。本文最后介绍了这种综合方法在我们使用大鼠模型大冢长崎德岛肥胖(OLETF)大鼠和日本黑牛进行的大理石花纹研究中的应用。

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