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利用计算机模拟和实验方法研究F17A突变对在毕赤酵母中表达的嗜热链状芽孢杆菌脂肪酶特性的影响。

Study of the effect of F17A mutation on characteristics of Bacillus thermocatenulatus lipase expressed in Pichia pastoris using in silico and experimental methods.

作者信息

Karimi Esmat, Karkhane Ali Asghar, Yakhchali Bagher, Shamsara Mehdi, Aminzadeh Saeed, Torktaz Ibrahim, Hosseini Mostafa, Safari Zahra

机构信息

Department of Industrial and Environmental Biotechnology, National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran, Iran.

出版信息

Biotechnol Appl Biochem. 2014 May-Jun;61(3):264-73. doi: 10.1002/bab.1164. Epub 2014 Mar 18.

DOI:10.1002/bab.1164
PMID:24641104
Abstract

Bacillus thermocatenulatus lipase 2 (BTL2), a thermoalkalophilic lipase, is the best studied enzyme for its particular properties, which make it useful in different industries. Displacement of conserved phenylalanine 17 (Phe-17) residue in the active site of BTL2 has a critical role in oxyanion hole formation, which is important for enzyme activity. In this study, to facilitate oxyanion hole formation, Phe-17 was substituted with Alanine residue (F17A). The best structures of the opened form of the native and mutated lipases were garnered based on the crystal structures of 2W22. To evaluate catalytic activity, both lipases were docked to a set of ligands using Hex 6.3 software. Following in silico study, both native and mutant btl2 genes were cloned and expressed in Pichia pastoris. Based on the results obtained, the mutation increased lipase lipolytic activity against most of the applied substrates, especially for tributyrin and tricaprylin, by 1.9 and 2.15 fold, respectively. However, optimum temperature and pH were the same for both lipases (60 °C and pH 8.0). As previously reported, it is believed that F17A mutation simplifies oxyanion hole formation and declines steric hindrance in the enzyme active site, which might ultimately lead to more efficient accessibility of substrates.

摘要

嗜热链状芽孢杆菌脂肪酶2(BTL2)是一种嗜热嗜碱脂肪酶,因其独特的性质而成为研究最为深入的酶,这些性质使其在不同行业中具有实用性。BTL2活性位点中保守的苯丙氨酸17(Phe-17)残基的置换在氧阴离子孔形成中起关键作用,而氧阴离子孔形成对酶活性很重要。在本研究中,为促进氧阴离子孔的形成,将Phe-17替换为丙氨酸残基(F17A)。基于2W22的晶体结构获得了天然和突变脂肪酶开放形式的最佳结构。为评估催化活性,使用Hex 6.3软件将两种脂肪酶与一组配体进行对接。经过计算机模拟研究后,将天然和突变的btl2基因克隆并在毕赤酵母中表达。根据所得结果,该突变使脂肪酶对大多数应用底物的脂解活性分别提高了1.9倍和2.15倍,尤其是对三丁酸甘油酯和三辛酸甘油酯。然而,两种脂肪酶的最佳温度和pH相同(60°C和pH 8.0)。如先前报道的那样,据信F17A突变简化了氧阴离子孔的形成并减少了酶活性位点的空间位阻,这最终可能导致底物更容易接近。

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