Rodriguez Patricia A, Hogenhout Saskia A, Bos Jorunn I B
Cell and Molecular Sciences Group, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Methods Mol Biol. 2014;1127:137-43. doi: 10.1007/978-1-62703-986-4_11.
Aphids, like plant pathogens, are known to form close associations with their host. While probing and feeding, these insects deliver effectors inside the host, which are thought to be involved in suppression of host defenses and/or the release of nutrients. With increasing availability of aphid genome and transcriptome sequencing data, effectors can now be identified using bioinformatics- and proteomics-based approaches. The next step is then to apply functional assays relevant to plant-aphid interactions to identify effector activities. This chapter describes an effective and medium-throughput screen for the identification of effectors that affect aphid fecundity upon in planta over-expression. This assay will allow the identification of aphid effectors with a role in aphid virulence and can be adapted to other plant species amenable to agroinfiltration as well as to other assays based on transient expression, such as RNAi.
与植物病原体一样,蚜虫也会与宿主形成紧密的联系。在刺探和取食过程中,这些昆虫会将效应子传递到宿主体内,据信这些效应子参与抑制宿主防御和/或释放营养物质。随着蚜虫基因组和转录组测序数据的日益丰富,现在可以使用基于生物信息学和蛋白质组学的方法来鉴定效应子。接下来的步骤是应用与植物-蚜虫相互作用相关的功能测定来鉴定效应子的活性。本章描述了一种有效且中等通量的筛选方法,用于鉴定在植物体内过表达时影响蚜虫繁殖力的效应子。该测定将能够鉴定在蚜虫致病性中起作用的蚜虫效应子,并且可以适用于其他适合农杆菌浸润的植物物种以及其他基于瞬时表达的测定,如RNA干扰。