Kennedy Brett, Kronenberg Zev, Hu Hao, Moore Barry, Flygare Steven, Reese Martin G, Jorde Lynn B, Yandell Mark, Huff Chad
Department of Human Genetics, University of Utah School of Medicine, Salt Lake City, Utah.
These authors collectively are the first authors of the unit.
Curr Protoc Hum Genet. 2014 Apr 24;81:6.14.1-6.14.25. doi: 10.1002/0471142905.hg0614s81.
The VAAST pipeline is specifically designed to identify disease-associated alleles in next-generation sequencing data. In the protocols presented in this paper, we outline the best practices for variant prioritization using VAAST. Examples and test data are provided for case-control, small pedigree, and large pedigree analyses. These protocols will teach users the fundamentals of VAAST, VAAST 2.0, and pVAAST analyses.
VAAST流程专门设计用于在下一代测序数据中识别疾病相关等位基因。在本文介绍的方案中,我们概述了使用VAAST进行变异优先级排序的最佳实践。提供了病例对照、小家系和大家系分析的示例及测试数据。这些方案将教会用户VAAST、VAAST 2.0和pVAAST分析的基本原理。