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基于天然产物的系统级多靶点药物发现及其在心血管疾病中的应用

System-level multi-target drug discovery from natural products with applications to cardiovascular diseases.

作者信息

Zheng Chunli, Wang Jinan, Liu Jianling, Pei Mengjie, Huang Chao, Wang Yonghua

机构信息

Center of Bioinformatics, College of Life Science, Northwest A&F University, Yangling, Shaanxi, China.

出版信息

Mol Divers. 2014 Aug;18(3):621-35. doi: 10.1007/s11030-014-9521-y. Epub 2014 May 4.

Abstract

The term systems pharmacology describes a field of study that uses computational and experimental approaches to broaden the view of drug actions rooted in molecular interactions and advance the process of drug discovery. The aim of this work is to stick out the role that the systems pharmacology plays across the multi-target drug discovery from natural products for cardiovascular diseases (CVDs). Firstly, based on network pharmacology methods, we reconstructed the drug-target and target-target networks to determine the putative protein target set of multi-target drugs for CVDs treatment. Secondly, we reintegrated a compound dataset of natural products and then obtained a multi-target compounds subset by virtual-screening process. Thirdly, a drug-likeness evaluation was applied to find the ADME-favorable compounds in this subset. Finally, we conducted in vitro experiments to evaluate the reliability of the selected chemicals and targets. We found that four of the five randomly selected natural molecules can effectively act on the target set for CVDs, indicating the reasonability of our systems-based method. This strategy may serve as a new model for multi-target drug discovery of complex diseases.

摘要

系统药理学这一术语描述了一个研究领域,该领域使用计算和实验方法来拓宽基于分子相互作用的药物作用视角,并推进药物发现过程。这项工作的目的是突出系统药理学在从天然产物中发现用于治疗心血管疾病(CVDs)的多靶点药物过程中所起的作用。首先,基于网络药理学方法,我们重建了药物-靶点和靶点-靶点网络,以确定用于治疗CVDs的多靶点药物的假定蛋白质靶点集。其次,我们重新整合了天然产物的化合物数据集,然后通过虚拟筛选过程获得了一个多靶点化合物子集。第三,应用药物相似性评估来在该子集中找到具有良好药物代谢动力学性质的化合物。最后,我们进行了体外实验以评估所选化学物质和靶点的可靠性。我们发现,随机选择的五个天然分子中有四个能够有效作用于CVDs的靶点集,这表明我们基于系统的方法具有合理性。该策略可能成为复杂疾病多靶点药物发现的一种新模式。

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