Disanto Giulio, Dobson Ruth, Pakpoor Julia, Elangovan Ramyiadarsini I, Adiutori Rocco, Kuhle Jens, Giovannoni Gavin
Queen Mary University of London, Blizard Institute, Barts and The London School of Medicine and Dentistry, London, United Kingdom.
Oxford medical school, University of Oxford, John Radcliffe Hospital, Oxford, United Kingdom.
PLoS One. 2014 May 2;9(5):e96578. doi: 10.1371/journal.pone.0096578. eCollection 2014.
A recent genome wide association study (GWAS) demonstrated that more than 100 genetic variants influence the risk of multiple sclerosis (MS). We investigated what proportion of the general population can be considered at high genetic risk of MS, whether genetic information can be used to predict disease development and how the recently found genetic associations have influenced these estimates. We used summary statistics from GWAS in MS to estimate the distribution of risk within a large simulated general population. We profiled MS associated loci in 70 MS patients and 79 healthy controls (HC) and assessed their position within the distribution of risk in the simulated population. The predictive performance of a weighted genetic risk score (wGRS) on disease status was investigated using receiver operating characteristic statistics. When all known variants were considered, 40.8% of the general population was predicted to be at reduced risk, 49% at average, 6.9% at elevated and 3.3% at high risk of MS. Fifty percent of MS patients were at either reduced or average risk of disease. However, they showed a significantly higher wGRS than HC (median 13.47 vs 12.46, p = 4.08×10(-10)). The predictive performance of the model including all currently known MS associations (area under the curve = 79.7%, 95%CI = 72.4%-87.0%) was higher than that of models considering previously known associations. Despite this, considering the relatively low prevalence of MS, the positive predictive value was below 1%. The increasing number of known associated genetic variants is improving our ability to predict the development of MS. This is still unlikely to be clinically useful but a more complete understanding of the complexity underlying MS aetiology and the inclusion of environmental risk factors will aid future attempts of disease prediction.
最近的一项全基因组关联研究(GWAS)表明,超过100种基因变异会影响多发性硬化症(MS)的风险。我们调查了普通人群中可被视为MS高遗传风险的比例,基因信息是否可用于预测疾病发展,以及最近发现的基因关联如何影响这些估计。我们使用MS的GWAS汇总统计数据来估计大型模拟普通人群中的风险分布。我们分析了70例MS患者和79例健康对照(HC)中与MS相关的基因座,并评估了它们在模拟人群风险分布中的位置。使用受试者工作特征统计方法研究了加权遗传风险评分(wGRS)对疾病状态的预测性能。当考虑所有已知变异时,预计40.8%的普通人群患MS的风险降低,49%为平均风险,6.9%风险升高,3.3%为高风险。50%的MS患者患疾病的风险降低或为平均风险。然而,他们的wGRS显著高于HC(中位数13.47对12.46,p = 4.08×10⁻¹⁰)。包含所有当前已知MS关联的模型的预测性能(曲线下面积 = 79.7%,95%CI = 72.4%-87.0%)高于考虑先前已知关联的模型。尽管如此,考虑到MS的相对低患病率,阳性预测值低于1%。已知相关基因变异数量的增加正在提高我们预测MS发展的能力。这在临床上仍不太可能有用,但对MS病因复杂性的更全面理解以及纳入环境风险因素将有助于未来的疾病预测尝试。