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应用傅立叶变换红外光谱和化学计量学快速区分单核细胞增生李斯特氏菌流行克隆 III 和 IV 及其与热灭活菌的区别。

Rapid differentiation of Listeria monocytogenes epidemic clones III and IV and their intact compared with heat-killed populations using Fourier transform infrared spectroscopy and chemometrics.

机构信息

Dept. of Nutrition and Food Sciences, Univ. of Vermont, 109 Carrigan Drive, 254 Carrigan Wing, Burlington, VT 05405, U.S.A.

出版信息

J Food Sci. 2014 Jun;79(6):M1189-96. doi: 10.1111/1750-3841.12475. Epub 2014 May 6.

Abstract

UNLABELLED

The objectives of this study were to determine if Fourier transform infrared (FT-IR) spectroscopy and multivariate statistical analysis (chemometrics) could be used to rapidly differentiate epidemic clones (ECs) of Listeria monocytogenes, as well as their intact compared with heat-killed populations. FT-IR spectra were collected from dried thin smears on infrared slides prepared from aliquots of 10 μL of each L. monocytogenes ECs (ECIII: J1-101 and R2-499; ECIV: J1-129 and J1-220), and also from intact and heat-killed cell populations of each EC strain using 250 scans at a resolution of 4 cm(-1) in the mid-infrared region in a reflectance mode. Chemometric analysis of spectra involved the application of the multivariate discriminant method for canonical variate analysis (CVA) and linear discriminant analysis (LDA). CVA of the spectra in the wavelength region 4000 to 600 cm(-1) separated the EC strains while LDA resulted in a 100% accurate classification of all spectra in the data set. Further, CVA separated intact and heat-killed cells of each EC strain and there was 100% accuracy in the classification of all spectra when LDA was applied. FT-IR spectral wavenumbers 1650 to 1390 cm(-1) were used to separate heat-killed and intact populations of L. monocytogenes. The FT-IR spectroscopy method allowed discrimination between strains that belong to the same EC. FT-IR is a highly discriminatory and reproducible method that can be used for the rapid subtyping of L. monocytogenes, as well as for the detection of live compared with dead populations of the organism.

PRACTICAL APPLICATION

Fourier transform infrared (FT-IR) spectroscopy and multivariate statistical analysis can be used for L. monocytogenes source tracking and for clinical case isolate comparison during epidemiological investigations since the method is capable of differentiating epidemic clones and it uses a library of well-characterized strains. The FT-IR method is potentially less expensive and more rapid compared to genetic subtyping methods, and can be used for L. monocytogenes strain typing by food industries and public health agencies to enable faster response and intervention to listeriosis outbreaks. FT-IR can also be applied for routine monitoring of the pathogen in food processing plants and for investigating postprocessing contamination because it is capable of differentiating heat-killed and viable L. monocytogenes populations.

摘要

目的

本研究旨在确定傅里叶变换红外(FT-IR)光谱和多元统计分析(化学计量学)是否可用于快速区分李斯特菌的流行克隆(EC)及其与热杀死群体的完整细胞。将 10μL 各李斯特菌 EC (ECIII:J1-101 和 R2-499;ECIV:J1-129 和 J1-220)的等分试样制备在红外载玻片上的干燥薄层上收集 FT-IR 光谱,并用 250 个扫描,分辨率为 4cm(-1),在中红外区域以反射模式。光谱的化学计量分析涉及应用多元判别法的典范变量分析(CVA)和线性判别分析(LDA)。在波长 4000 至 600cm(-1)的光谱的 CVA 分离了 EC 菌株,而 LDA 则使数据集中所有光谱的分类达到 100%准确。此外,CVA 分离了每个 EC 菌株的完整和热杀死细胞,而当应用 LDA 时,所有光谱的分类准确率达到 100%。FT-IR 光谱波数 1650 至 1390cm(-1)用于分离李斯特菌的热杀死和完整细胞。FT-IR 光谱法可用于区分属于同一 EC 的菌株。FT-IR 是一种高度有鉴别力且可重复的方法,可用于快速对李斯特菌进行亚分型,以及用于检测生物体的活菌与死菌。

实际应用

傅里叶变换红外(FT-IR)光谱和多元统计分析可用于李斯特菌的溯源和流行病学调查中的临床分离株比较,因为该方法能够区分流行克隆,并且使用了特征良好的菌株库。与遗传分型方法相比,FT-IR 方法的成本更低,速度更快,并且可以用于食品工业和公共卫生机构对李斯特菌菌株进行分型,从而可以更快地对李斯特菌病爆发做出反应和干预。FT-IR 还可用于食品加工厂中病原体的常规监测和后续加工污染的调查,因为它能够区分热杀死和存活的李斯特菌。

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