Nan Chun-Yan, Ma Ya-Jun, Xu Jian-Nong, Liang Jian
Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi. 2013 Apr;31(2):114-9.
To investigate the bacteria diversity in larval gut of field-collected Anopheles sinensis.
The 16S rDNA V4 region of An. sinensis larvae collected from paddy on Jiading District of Shanghai (L1/L2) and small seeping water on Wenchang City of Hainan (AS) was sequenced by high-throughput pyrosequencing. Using Qiime and Mothur softwares, the number of sequences and operational taxonomic units (OTUs) for each sample was sorted and calculated, the species abundance and distribution, Alpha diversity index and difference times of species abundance among samples were analyzed.
The number of sequences and OTUs for each sample were 253 724/3 930 (L1), 225 203/4 312 (L2) and 73 990/2 380 (AS). The rarefaction curves showed that adequate sampling was achieved. The number of OTUs was close to actual situation. The value of richness index was 5 942.61/6 534.88 (L1), 6 328.17/7 235.89 (L2) and 4228.66/5 651.20 (AS); diversity index was 4.63/0.03 (L1), 5.10/0.02 (L2) and 0.14/3.94 (AS). The dominant species of An. sinensis larvae gut microbiota all belonged to the phylum Proteobacteria, with a percentage of 87% (AS) and 90% (L). In addition, the dominant phyla among them were Firmicutes, Bacteroidetes and Actinobacteria. The comparison of bacterial abundance between L and AS showed that there were 18 phyla with significant difference, except the Proteobacteria and Deinococcus-Thermus; only 9 phyla were different significantly between L1 and L2.
Evenness and richness of bacteria flora in the An. sinensis larvae gut collected from paddy and small seeping waters were obtained.
调查野外采集的中华按蚊幼虫肠道内的细菌多样性。
对采自上海嘉定区稻田(L1/L2)和海南文昌市小渗水处(AS)的中华按蚊幼虫的16S rDNA V4区进行高通量焦磷酸测序。利用Qiime和Mothur软件对每个样本的序列数和可操作分类单元(OTU)进行整理和计算,分析物种丰度与分布、Alpha多样性指数以及样本间物种丰度的差异倍数。
每个样本的序列数和OTU分别为253 724/3 930(L1)、225 203/4 312(L2)和73 990/2 380(AS)。稀释曲线表明采样充分,OTU数量接近实际情况。丰富度指数值分别为5 942.61/6 534.88(L1)、6 328.17/7 235.89(L2)和4228.66/5 651.20(AS);多样性指数分别为4.63/0.03(L1)、5.10/0.02(L2)和0.14/3.94(AS)。中华按蚊幼虫肠道微生物群的优势种均属于变形菌门,占比分别为87%(AS)和90%(L)。此外,其中的优势菌门还有厚壁菌门、拟杆菌门和放线菌门。L和AS之间细菌丰度的比较表明,除变形菌门和嗜热栖热放线菌外,有其他18个菌门存在显著差异;L1和L2之间只有9个菌门有显著差异。
获得了采自稻田和小渗水处的中华按蚊幼虫肠道内细菌菌群的均匀度和丰富度。