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同源溶菌酶中水和三氟乙醇的非均相优先溶剂化作用

Heterogeneous preferential solvation of water and trifluoroethanol in homologous lysozymes.

作者信息

Arthur Evan J, King John T, Kubarych Kevin J, Brooks Charles L

机构信息

Department of Chemistry and ‡Biophysics Program, University of Michigan , 930 N. University Avenue , Ann Arbor, Michigan 48109-1055, USA.

出版信息

J Phys Chem B. 2014 Jul 17;118(28):8118-27. doi: 10.1021/jp501132z. Epub 2014 May 29.

Abstract

Cytoplasmic osmolytes can significantly alter the thermodynamic and kinetic properties of proteins relative to those under dilute solution conditions. Spectroscopic experiments of lysozymes in cosolvents indicate that such changes may arise from the heterogeneous, site-specific hydrophobic interactions between protein surface residues and individual solvent molecules. In pursuit of an accurate and predictive model for explaining biomolecular interactions, we study the averaged structural characteristics of mixed solvents with homologous lysozyme solutes using all-atom molecular dynamics. By observing the time-averaged densities of different aqueous solutions of trifluoroethanol, we deduce trends in the heterogeneous solvent interactions over each protein's surface, and investigate how the homology of protein structure does not necessarily translate to similarities in solvent structure and composition-even when observing identical side chains.

摘要

相对于稀溶液条件下的蛋白质,细胞质渗透压溶质可显著改变蛋白质的热力学和动力学性质。溶菌酶在共溶剂中的光谱实验表明,此类变化可能源于蛋白质表面残基与单个溶剂分子之间异质的、位点特异性的疏水相互作用。为了寻求一个准确且具有预测性的模型来解释生物分子相互作用,我们使用全原子分子动力学研究了含有同源溶菌酶溶质的混合溶剂的平均结构特征。通过观察三氟乙醇不同水溶液的时间平均密度,我们推断出每种蛋白质表面异质溶剂相互作用的趋势,并研究蛋白质结构的同源性如何不一定转化为溶剂结构和组成的相似性——即使观察到相同的侧链。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ef9/4216199/69228e9cd181/jp-2014-01132z_0001.jpg

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