Mebs Stefan, Chilleck Maren Annika, Meindl Kathrin, Hübschle Christian Bertram
Department of Experimental Physics, Freie Universität Berlin , Arnimallee 14, D-14195 Berlin, Germany.
J Phys Chem A. 2014 Jun 19;118(24):4351-62. doi: 10.1021/jp503667g. Epub 2014 Jun 6.
Despite numerous advanced and widely distributed bonding theories such as MO, VB, NBO, AIM, and ELF/ELI-D, complex modes of bonding such as M-Cp*((R)) interactions (hapticities) in asymmetrical metallocenes or weak intramolecular interactions (e.g., hydrogen-hydrogen (H···H) bonds) still remain a challenge for these theories in terms of defining whether or not an atom-atom interaction line (a "chemical bond") should be drawn. In this work the intramolecular Zn-C(Cp*(R)) (R = Me, -(CH2)2NMe2, and -(CH2)3NMe2) and H···H connectivity of a systematic set of 12 zincocene-related compounds is analyzed in terms of AIM and ELI-D topology combined with the recently introduced aspherical stockholder fragment (ASF) surfaces. This computational analysis unravels a distinct dependency of the AIM and ELI-D topology against the molecular geometry for both types of interactions, which confirms and extends earlier findings on smaller sets of compounds. According to these results the complete real-space topology including strong, medium, and weak interactions of very large compounds such as proteins may be reliably predicted by sole inspection of accurately determined molecular geometries, which would on the one hand afford new applications (e.g., accurate estimation of numbers, types, and strengths of intra- and intermolecular interactions) and on the other hand have deep implications on the significance of the method.
尽管有众多先进且广泛应用的成键理论,如分子轨道(MO)、价键(VB)、自然键轨道(NBO)、原子分子相互作用理论(AIM)以及电子定域函数/电子定位相互作用密度(ELF/ELI-D),但对于不对称茂金属中的M-Cp*((R))相互作用(配体配位模式)或弱分子内相互作用(例如氢-氢(H···H)键)等复杂成键模式而言,在确定是否应绘制原子-原子相互作用线(“化学键”)方面,这些理论仍然面临挑战。在本工作中,结合最近引入的非球形股东片段(ASF)表面,依据AIM和ELI-D拓扑结构对一组包含12种与二茂锌相关化合物的分子内Zn-C(Cp*(R))(R = 甲基、-(CH2)2NMe2和-(CH2)3NMe2)以及H···H连接性进行了分析。该计算分析揭示了这两种相互作用的AIM和ELI-D拓扑结构对分子几何形状存在明显依赖性,这证实并扩展了早期对较小化合物集的研究结果。根据这些结果,通过仅检查精确确定的分子几何形状,就可以可靠地预测包括蛋白质等非常大的化合物的强、中、弱相互作用在内的完整实空间拓扑结构,这一方面将带来新的应用(例如,准确估计分子内和分子间相互作用的数量、类型和强度),另一方面对该方法的重要性具有深远影响。