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玉米氮素利用效率:从“组学”研究到代谢建模。

Nitrogen-use efficiency in maize (Zea mays L.): from 'omics' studies to metabolic modelling.

机构信息

Department of Chemical Engineering, The Pennsylvania State University, University Park, PA 16802, USA.

Adaptation des Plantes à leur Environnement, Unité Mixte de Recherche 1318, INRA-Agro-ParisTech, Institut Jean-Pierre Bourgin, Institut National de la Recherche Agronomique (INRA), Centre de Versailles-Grignon, RD 10, 78026 Versailles cedex, France.

出版信息

J Exp Bot. 2014 Oct;65(19):5657-71. doi: 10.1093/jxb/eru227. Epub 2014 May 26.

Abstract

In this review, we will present the latest developments in systems biology with particular emphasis on improving nitrogen-use efficiency (NUE) in crops such as maize and demonstrating the application of metabolic models. The review highlights the importance of improving NUE in crops and provides an overview of the transcriptome, proteome, and metabolome datasets available, focusing on a comprehensive understanding of nitrogen regulation. 'Omics' data are hard to interpret in the absence of metabolic flux information within genome-scale models. These models, when integrated with 'omics' data, can serve as a basis for generating predictions that focus and guide further experimental studies. By simulating different nitrogen (N) conditions at a pseudo-steady state, the reactions affecting NUE and additional gene regulations can be determined. Such models thus provide a framework for improving our understanding of the metabolic processes underlying the more efficient use of N-based fertilizers.

摘要

在这篇综述中,我们将介绍系统生物学的最新进展,特别强调提高玉米等作物的氮利用效率(NUE),并展示代谢模型的应用。本文强调了提高作物 NUE 的重要性,并概述了转录组、蛋白质组和代谢组数据集,重点是对氮调控的全面理解。在缺乏基因组规模模型中代谢通量信息的情况下,“组学”数据难以解释。当这些模型与“组学”数据集成时,可以作为生成预测的基础,这些预测可以集中并指导进一步的实验研究。通过在准稳态下模拟不同的氮(N)条件,可以确定影响 NUE 和其他基因调控的反应。因此,这些模型为我们深入了解更有效地利用基于 N 的肥料的代谢过程提供了一个框架。

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