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通过线粒体基因组测序揭示大西洋鳗鱼(欧洲鳗鲡和美洲鳗鲡)的物种形成和种群历史。

Speciation and demographic history of Atlantic eels (Anguilla anguilla and A. rostrata) revealed by mitogenome sequencing.

作者信息

Jacobsen M W, Pujolar J M, Gilbert M T P, Moreno-Mayar J V, Bernatchez L, Als T D, Lobon-Cervia J, Hansen M M

机构信息

Department of Bioscience, Aarhus University, Aarhus C, Denmark.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.

出版信息

Heredity (Edinb). 2014 Nov;113(5):432-42. doi: 10.1038/hdy.2014.44. Epub 2014 May 28.

Abstract

Processes leading to speciation in oceanic environments without obvious physical barriers remain poorly known. European and American eel (Anguilla anguilla and A. rostrata) spawn in partial sympatry in the Sargasso Sea. Larvae are advected by the Gulf Stream and other currents towards the European/North African and North American coasts, respectively. We analyzed 104 mitogenomes from the two species along with mitogenomes of other Anguilla and outgroup species. We estimated divergence time between the two species to identify major events involved in speciation. We also considered two previously stated hypotheses: one where the ancestral species was present in only one continent but was advected across the Atlantic by ocean current changes and another where population declines during Pleistocene glaciations led to increasing vicariance, facilitating speciation. Divergence time was estimated to ∼3.38 Mya, coinciding with the closure of the Panama Gateway that led to reinforcement of the Gulf Stream. This could have advected larvae towards European/North African coasts, in which case American eel would be expected to be the ancestral species. This scenario could, however, not be unequivocally confirmed by analyses of dN/dS, nucleotide diversity and effective population size estimates. Extended bayesian skyline plots showed fluctuations of effective population sizes and declines during glaciations, and thus also lending support to the importance of vicariance during speciation. There was evidence for positive selection at the ATP6 and possibly ND5 genes, indicating a role in speciation. The findings suggest an important role of ocean current changes in speciation of marine organisms.

摘要

在没有明显物理屏障的海洋环境中导致物种形成的过程仍然鲜为人知。欧洲鳗鲡和美洲鳗鲡(Anguilla anguilla和A. rostrata)在马尾藻海部分同域产卵。幼体分别被墨西哥湾暖流和其他洋流带到欧洲/北非和北美海岸。我们分析了这两个物种的104个线粒体基因组以及其他鳗鲡属物种和外类群物种的线粒体基因组。我们估计了这两个物种之间的分歧时间,以确定物种形成过程中的主要事件。我们还考虑了两个先前提出的假说:一个假说是祖先物种仅存在于一个大陆,但因洋流变化被带到了大西洋彼岸;另一个假说是更新世冰川期期间种群数量下降导致地理隔离增加,从而促进了物种形成。估计分歧时间约为338万年前,这与巴拿马海峡的关闭相吻合,该事件导致墨西哥湾暖流增强。这可能将幼体带到了欧洲/北非海岸,在这种情况下,美洲鳗鲡有望是祖先物种。然而,通过对非同义替换与同义替换率、核苷酸多样性和有效种群大小估计的分析,无法明确证实这一情况。扩展贝叶斯天际线图显示了有效种群大小的波动以及冰川期期间的下降,因此也支持了地理隔离在物种形成过程中的重要性。有证据表明ATP6基因以及可能的ND5基因存在正选择,表明其在物种形成中发挥作用。研究结果表明洋流变化在海洋生物物种形成中起着重要作用。

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The genomics of speciation-with-gene-flow.基因流条件下物种形成的基因组学
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