Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, PR China.
Department of Biological Sciences, Kent State University, Kent, Ohio 44240, USA.
Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):3120-3125. doi: 10.1099/ijs.0.061051-0. Epub 2014 Jun 18.
An actinomycete strain, designated I12A-02593(T), was isolated from a desert soil crust sample collected in the Shapotou region of Tengger Desert, north-west China. The isolate grew well on International Streptomyces Project (ISP) media 2, 3, 5 and 7, YS and Bennett's agar; it produced spherical bodies and formed clumps on the aerial mycelia on ISP 5 agar plates. Chemotaxonomically, the strain contained meso-diaminopimelic acid as the diagnostic diamino acid, arabinose and galactose as the diagnostic sugars in whole-cell hydrolysates, MK-9(H4) as the sole isoprenoid quinone, and iso-C16 : 0, iso-C16 : 0 2-OH and iso-C16 : 1 H as the major cellular fatty acids, without mycolic acids. The profile of the phospholipids mainly comprised diphosphatidylglycerol, phosphatidylethanolamine and hydroxyphosphatidylethanolamine. The genomic DNA G+C content was 70.1 mol%. The 16S rRNA gene sequence of strain I12A-02593(T) exhibited 96.4-97.4 % similarities with members of the genus Actinophytocola. In the phylogenetic tree based on 16S rRNA gene sequences, the isolate formed a robust cluster with Actinophytocola oryzae NBRC 105245(T), Aactinophytocola timorensis NBRC 105524(T), Actinophytocola corallina NBRC 105525(T), Actinophytocola burenkhanensis NBRC 105883(T)and Actinophytocola xinjiangensis NBRC 106673(T). DNA-DNA hybridization values between strain I12A-02593(T) and the five species of the genus Actinophytocola were all less than 70 %. On the basis of the polyphasic taxonomy evidence, a novel species of the genus Actinophytocola is proposed, with the name Actinophytocola gilvus sp. nov. The type strain is I12A-02593(T) ( = CPCC 203543(T) = DSM 45828(T) = NBRC 109453(T) = KCTC 29165(T)). An emended description of the genus Actinophytocola is also provided.
一株放线菌菌株,命名为 I12A-02593(T),从中国西北腾格里沙漠沙坡头地区的沙漠土壤结皮样本中分离得到。该菌株在国际链霉菌计划 (ISP) 培养基 2、3、5 和 7、YS 和 Bennett 琼脂上生长良好;它在 ISP5 琼脂平板上气生菌丝上产生球形小体并形成团块。化学分类学上,该菌株含有meso-二氨基庚二酸作为诊断二氨基酸,全细胞水解物中含有阿拉伯糖和半乳糖作为诊断糖,MK-9(H4)作为唯一的异戊烯醌,iso-C16:0、iso-C16:0 2-OH 和 iso-C16:1 H 作为主要的细胞脂肪酸,没有类脂酸。磷脂的图谱主要由双磷脂酰甘油、磷脂酰乙醇胺和羟基磷脂酰乙醇胺组成。菌株 I12A-02593(T)的基因组 DNA G+C 含量为 70.1mol%。菌株 I12A-02593(T)的 16S rRNA 基因序列与 Actinophytocola 属的成员表现出 96.4-97.4%的相似性。在基于 16S rRNA 基因序列的系统发育树中,该分离株与 Actinophytocola oryzae NBRC 105245(T)、Aactinophytocola timorensis NBRC 105524(T)、Actinophytocola corallina NBRC 105525(T)、Actinophytocola burenkhanensis NBRC 105883(T)和 Actinophytocola xinjiangensis NBRC 106673(T)一起形成了一个强大的聚类。菌株 I12A-02593(T)与该属的 5 个种之间的 DNA-DNA 杂交值均小于 70%。基于多相分类学证据,提出了一个新的 Actinophytocola 属种,命名为 Actinophytocola gilvus sp. nov. 模式菌株为 I12A-02593(T)(=CPCC 203543(T)=DSM 45828(T)=NBRC 109453(T)=KCTC 29165(T))。还提供了 Actinophytocola 属的修订描述。