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吉氏 actinophytocola 新种,从荒漠土壤结皮中分离得到,同时对 2010 年 Indananda 等人描述的 actinophytocola 属进行了修正。

Actinophytocola gilvus sp. nov., isolated from desert soil crusts, and emended description of the genus Actinophytocola Indananda et al. 2010.

机构信息

Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, PR China.

Department of Biological Sciences, Kent State University, Kent, Ohio 44240, USA.

出版信息

Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):3120-3125. doi: 10.1099/ijs.0.061051-0. Epub 2014 Jun 18.

Abstract

An actinomycete strain, designated I12A-02593(T), was isolated from a desert soil crust sample collected in the Shapotou region of Tengger Desert, north-west China. The isolate grew well on International Streptomyces Project (ISP) media 2, 3, 5 and 7, YS and Bennett's agar; it produced spherical bodies and formed clumps on the aerial mycelia on ISP 5 agar plates. Chemotaxonomically, the strain contained meso-diaminopimelic acid as the diagnostic diamino acid, arabinose and galactose as the diagnostic sugars in whole-cell hydrolysates, MK-9(H4) as the sole isoprenoid quinone, and iso-C16 : 0, iso-C16 : 0 2-OH and iso-C16 : 1 H as the major cellular fatty acids, without mycolic acids. The profile of the phospholipids mainly comprised diphosphatidylglycerol, phosphatidylethanolamine and hydroxyphosphatidylethanolamine. The genomic DNA G+C content was 70.1 mol%. The 16S rRNA gene sequence of strain I12A-02593(T) exhibited 96.4-97.4 % similarities with members of the genus Actinophytocola. In the phylogenetic tree based on 16S rRNA gene sequences, the isolate formed a robust cluster with Actinophytocola oryzae NBRC 105245(T), Aactinophytocola timorensis NBRC 105524(T), Actinophytocola corallina NBRC 105525(T), Actinophytocola burenkhanensis NBRC 105883(T)and Actinophytocola xinjiangensis NBRC 106673(T). DNA-DNA hybridization values between strain I12A-02593(T) and the five species of the genus Actinophytocola were all less than 70 %. On the basis of the polyphasic taxonomy evidence, a novel species of the genus Actinophytocola is proposed, with the name Actinophytocola gilvus sp. nov. The type strain is I12A-02593(T) ( = CPCC 203543(T) = DSM 45828(T) = NBRC 109453(T) = KCTC 29165(T)). An emended description of the genus Actinophytocola is also provided.

摘要

一株放线菌菌株,命名为 I12A-02593(T),从中国西北腾格里沙漠沙坡头地区的沙漠土壤结皮样本中分离得到。该菌株在国际链霉菌计划 (ISP) 培养基 2、3、5 和 7、YS 和 Bennett 琼脂上生长良好;它在 ISP5 琼脂平板上气生菌丝上产生球形小体并形成团块。化学分类学上,该菌株含有meso-二氨基庚二酸作为诊断二氨基酸,全细胞水解物中含有阿拉伯糖和半乳糖作为诊断糖,MK-9(H4)作为唯一的异戊烯醌,iso-C16:0、iso-C16:0 2-OH 和 iso-C16:1 H 作为主要的细胞脂肪酸,没有类脂酸。磷脂的图谱主要由双磷脂酰甘油、磷脂酰乙醇胺和羟基磷脂酰乙醇胺组成。菌株 I12A-02593(T)的基因组 DNA G+C 含量为 70.1mol%。菌株 I12A-02593(T)的 16S rRNA 基因序列与 Actinophytocola 属的成员表现出 96.4-97.4%的相似性。在基于 16S rRNA 基因序列的系统发育树中,该分离株与 Actinophytocola oryzae NBRC 105245(T)、Aactinophytocola timorensis NBRC 105524(T)、Actinophytocola corallina NBRC 105525(T)、Actinophytocola burenkhanensis NBRC 105883(T)和 Actinophytocola xinjiangensis NBRC 106673(T)一起形成了一个强大的聚类。菌株 I12A-02593(T)与该属的 5 个种之间的 DNA-DNA 杂交值均小于 70%。基于多相分类学证据,提出了一个新的 Actinophytocola 属种,命名为 Actinophytocola gilvus sp. nov. 模式菌株为 I12A-02593(T)(=CPCC 203543(T)=DSM 45828(T)=NBRC 109453(T)=KCTC 29165(T))。还提供了 Actinophytocola 属的修订描述。

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