Zhang Yan, Yang Huirong, Guo Xue, Rong Naiyan, Song Yujiao, Xu Youwei, Lan Wenxian, Zhang Xu, Liu Maili, Xu Yanhui, Cao Chunyang
State Key Laboratory of Bio-organic and Natural Product Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, 200032, China.
Protein Cell. 2014 Nov;5(11):837-50. doi: 10.1007/s13238-014-0078-4. Epub 2014 Jun 22.
KDM5B is a histone H3K4me2/3 demethylase. The PHD1 domain of KDM5B is critical for demethylation, but the mechanism underlying the action of this domain is unclear. In this paper, we observed that PHD1KDM5B interacts with unmethylated H3K4me0. Our NMR structure of PHD1KDM5B in complex with H3K4me0 revealed that the binding mode is slightly different from that of other reported PHD fingers. The disruption of this interaction by double mutations on the residues in the interface (L325A/D328A) decreases the H3K4me2/3 demethylation activity of KDM5B in cells by approximately 50% and increases the transcriptional repression of tumor suppressor genes by approximately twofold. These findings imply that PHD1KDM5B may help maintain KDM5B at target genes to mediate the demethylation activities of KDM5B.
KDM5B是一种组蛋白H3K4me2/3去甲基化酶。KDM5B的PHD1结构域对去甲基化至关重要,但其作用机制尚不清楚。在本文中,我们观察到PHD1KDM5B与未甲基化的H3K4me0相互作用。我们解析的PHD1KDM5B与H3K4me0复合物的核磁共振结构表明,其结合模式与其他已报道的PHD指结构略有不同。通过对界面处残基进行双突变(L325A/D328A)破坏这种相互作用,可使细胞中KDM5B的H3K4me2/3去甲基化活性降低约50%,并使肿瘤抑制基因的转录抑制增加约两倍。这些发现表明,PHD1KDM5B可能有助于将KDM5B维持在靶基因上,以介导KDM5B的去甲基化活性。