Suppr超能文献

产青霉素的产黄青霉工业祖代菌株P2niaD18的全基因组测序及染色体水平基因组组装

Complete Sequencing and Chromosome-Scale Genome Assembly of the Industrial Progenitor Strain P2niaD18 from the Penicillin Producer Penicillium chrysogenum.

作者信息

Specht Thomas, Dahlmann Tim A, Zadra Ivo, Kürnsteiner Hubert, Kück Ulrich

机构信息

Sandoz GmbH, Kundl, Austria.

Christian Doppler Laboratory for Fungal Biotechnology, Lehrstuhl für Allgemeine und Molekulare Botanik, Ruhr-Universität Bochum, Bochum, Germany.

出版信息

Genome Announc. 2014 Jul 24;2(4):e00577-14. doi: 10.1128/genomeA.00577-14.

Abstract

Penicillium chrysogenum is the major industrial producer of the β-lactam antibiotic penicillin. Here, we report the complete genome sequence of the industrial progenitor strain P. chrysogenum P2niaD18 in a chromosome-scale genome assembly. P2niaD18 is distinguished from the recently sequenced P. chrysogenum Wisconsin 54-1255 strain by major chromosomal rearrangements leading to a modified chromosomal architecture.

摘要

产黄青霉是β-内酰胺抗生素青霉素的主要工业生产菌株。在此,我们报告了工业祖代菌株产黄青霉P2niaD18在染色体水平基因组组装下的完整基因组序列。P2niaD18与最近测序的产黄青霉Wisconsin 54-1255菌株的区别在于主要的染色体重排,导致染色体结构发生改变。

相似文献

3
Structural variation among wild and industrial strains of Penicillium chrysogenum.
PLoS One. 2014 May 13;9(5):e96784. doi: 10.1371/journal.pone.0096784. eCollection 2014.
4
Impact of the Penicillium chrysogenum genome on industrial production of metabolites.
Appl Microbiol Biotechnol. 2011 Oct;92(1):45-53. doi: 10.1007/s00253-011-3476-z. Epub 2011 Jul 30.
8
Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum.
Nat Biotechnol. 2008 Oct;26(10):1161-8. doi: 10.1038/nbt.1498. Epub 2008 Sep 28.
9
, a Vintage Model with a Cutting-Edge Profile in Biotechnology.
Microorganisms. 2022 Mar 6;10(3):573. doi: 10.3390/microorganisms10030573.
10
Gene organization and plasticity of the beta-lactam genes in different filamentous fungi.
Antonie Van Leeuwenhoek. 1999 Jan-Feb;75(1-2):81-94. doi: 10.1023/a:1001861025070.

引用本文的文献

1
3
Genome sequencing and analysis of penicillin V producing Penicillium rubens strain BIONCL P45 isolated from India.
Int Microbiol. 2024 Oct;27(5):1473-1484. doi: 10.1007/s10123-024-00491-0. Epub 2024 Feb 22.
4
Genomic insights into Penicillium chrysogenum adaptation to subseafloor sedimentary environments.
BMC Genomics. 2024 Jan 2;25(1):4. doi: 10.1186/s12864-023-09921-1.
5
Comparative analysis of genomes reveals the absence of a specific genetic basis for biocontrol in strain 212.
Front Microbiol. 2023 Jan 13;13:1075327. doi: 10.3389/fmicb.2022.1075327. eCollection 2022.
7
, a Vintage Model with a Cutting-Edge Profile in Biotechnology.
Microorganisms. 2022 Mar 6;10(3):573. doi: 10.3390/microorganisms10030573.
8
Biosynthetic process and strain improvement approaches for industrial penicillin production.
Biotechnol Lett. 2022 Feb;44(2):179-192. doi: 10.1007/s10529-022-03222-5. Epub 2022 Jan 9.
9
The Confusion in Renaming Species: Penicillium chrysogenum and Penicillium rubens.
Microbiol Resour Announc. 2021 Dec 2;10(48):e0046421. doi: 10.1128/MRA.00464-21.
10
Recommendations To Prevent Taxonomic Misidentification of Genome-Sequenced Fungal Strains.
Microbiol Resour Announc. 2021 Dec 2;10(48):e0107420. doi: 10.1128/MRA.01074-20.

本文引用的文献

1
Fast and accurate short read alignment with Burrows-Wheeler transform.
Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18.
2
Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum.
Nat Biotechnol. 2008 Oct;26(10):1161-8. doi: 10.1038/nbt.1498. Epub 2008 Sep 28.
3
Eighty years after its discovery, Fleming's Penicillium strain discloses the secret of its sex.
Eukaryot Cell. 2008 Mar;7(3):465-70. doi: 10.1128/EC.00430-07. Epub 2008 Jan 25.
4
Gene prediction with a hidden Markov model and a new intron submodel.
Bioinformatics. 2003 Oct;19 Suppl 2:ii215-25. doi: 10.1093/bioinformatics/btg1080.
5
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.
6
A new DNA sequence assembly program.
Nucleic Acids Res. 1995 Dec 25;23(24):4992-9. doi: 10.1093/nar/23.24.4992.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验