Goyal Puja, Qian Hu-Jun, Irle Stephan, Lu Xiya, Roston Daniel, Mori Toshifumi, Elstner Marcus, Cui Qiang
Department of Chemistry and Theoretical Chemistry Institute, University of Wisconsin-Madison , 1101 University Avenue, Madison, Wisconsin 53706, United States.
J Phys Chem B. 2014 Sep 25;118(38):11007-27. doi: 10.1021/jp503372v. Epub 2014 Sep 16.
We discuss the description of water and hydration effects that employs an approximate density functional theory, DFTB3, in either a full QM or QM/MM framework. The goal is to explore, with the current formulation of DFTB3, the performance of this method for treating water in different chemical environments, the magnitude and nature of changes required to improve its performance, and factors that dictate its applicability to reactions in the condensed phase in a QM/MM framework. A relatively minor change (on the scale of kBT) in the O-H repulsive potential is observed to substantially improve the structural properties of bulk water under ambient conditions; modest improvements are also seen in dynamic properties of bulk water. This simple change also improves the description of protonated water clusters, a solvated proton, and to a more limited degree, a solvated hydroxide. By comparing results from DFTB3 models that differ in the description of water, we confirm that proton transfer energetics are adequately described by the standard DFTB3/3OB model for meaningful mechanistic analyses. For QM/MM applications, a robust parametrization of QM-MM interactions requires an explicit consideration of condensed phase properties, for which an efficient sampling technique was developed recently and is reviewed here. The discussions help make clear the value and limitations of DFTB3 based simulations, as well as the developments needed to further improve the accuracy and transferability of the methodology.
我们讨论了在全量子力学(QM)或量子力学/分子力学(QM/MM)框架下,采用近似密度泛函理论DFTB3对水和水合作用的描述。目标是利用当前DFTB3的公式,探索该方法在不同化学环境中处理水的性能、改善其性能所需变化的幅度和性质,以及在QM/MM框架下决定其适用于凝聚相反应的因素。在O-H排斥势中观察到一个相对较小的变化(在kBT尺度上)能显著改善环境条件下 bulk water的结构性质;在bulk water的动力学性质方面也有适度改善。这个简单的变化还改善了质子化水团簇、溶剂化质子的描述,在一定程度上也改善了溶剂化氢氧根的描述。通过比较在水的描述上不同的DFTB3模型的结果,我们证实对于有意义的机理分析,标准的DFTB3/3OB模型能充分描述质子转移能量学。对于QM/MM应用,QM-MM相互作用的稳健参数化需要明确考虑凝聚相性质,最近为此开发了一种有效的采样技术并在此进行综述。这些讨论有助于明确基于DFTB3模拟的价值和局限性,以及进一步提高该方法的准确性和可转移性所需的进展。