Piégu Benoît, Guizard Sébastien, Yeping Tan, Cruaud Corinne, Couloux Arnault, Bideshi Dennis K, Federici Brian A, Bigot Yves
UMR INRA-CNRS 7247, PRC, Centre INRA de Nouzilly, Nouzilly, France.
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Stand Genomic Sci. 2014 Apr 20;9(3):940-7. doi: 10.4056/sigs.5059132. eCollection 2014 Jun 15.
Members of the family Iridoviridae are animal viruses that infect only invertebrates and poikilothermic vertebrates. The invertebrate iridoviruses 22 (IIV22) and 25 (IIV25) were originally isolated from a single sample of blackfly larva (Simulium spp., order Diptera) collected from the Ystwyth river near Aberystwyth, Wales. Recently, the genomes of IIV22 (197.7 kbp) and IIV25 (204.8 kbp) were sequenced and reported. Here, we describe the complete genome sequence of IIV22A, a variant that was isolated from the same pool of virions collected from the blackfly larva from which the IIV22 virion genome originated. The IIV22A genome, 196.5 kbp, is smaller than IIV22. Nevertheless, it contains 7 supplementary putative ORFs. Its analysis enables evaluation of the degree of genomic polymorphisms within an IIV isolate. Despite the occurrence of this IIV variant with IIV22 and IIV25 in a single blackfly larva and the features of their DNA polymerase, we found no evidence of lateral genetic transfers between the genomes of these two IIV species.
虹彩病毒科的成员是仅感染无脊椎动物和变温脊椎动物的动物病毒。无脊椎动物虹彩病毒22(IIV22)和25(IIV25)最初是从采自威尔士阿伯里斯特威斯附近伊斯威思河的单个蚋幼虫(蚋属,双翅目)样本中分离出来的。最近,IIV22(197.7 kbp)和IIV25(204.8 kbp)的基因组已被测序并报道。在此,我们描述了IIV22A的完整基因组序列,IIV22A是从与IIV22病毒粒子基因组来源相同的蚋幼虫所采集的同一批病毒粒子中分离出的一个变体。IIV22A基因组大小为196.5 kbp,比IIV22小。然而,它包含7个额外的推定开放阅读框。对其分析能够评估IIV分离株内基因组多态性的程度。尽管在单个蚋幼虫中出现了这种IIV变体与IIV22和IIV25共存的情况,并且它们的DNA聚合酶具有相应特征,但我们未发现这两种IIV物种基因组之间存在横向基因转移的证据。