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虹彩病毒的进化关系以及无脊椎动物虹彩病毒在巨病毒目中超家族中与正痘病毒的分化。

Evolutionary relationships of iridoviruses and divergence of ascoviruses from invertebrate iridoviruses in the superfamily Megavirales.

作者信息

Piégu Benoît, Asgari Sassan, Bideshi Dennis, Federici Brian A, Bigot Yves

机构信息

UMR INRA-CNRS 7247, PRC, Centre INRA de Nouzilly, 37380 Nouzilly, France.

UMR INRA-CNRS 7247, PRC, Centre INRA de Nouzilly, 37380 Nouzilly, France; School of Biological Sciences, The University of Queensland, Brisbane, QLD 4072, Australia.

出版信息

Mol Phylogenet Evol. 2015 Mar;84:44-52. doi: 10.1016/j.ympev.2014.12.013. Epub 2015 Jan 3.

Abstract

The family Iridoviridae of the superfamily Megavirales currently consists of five genera. Three of these, Lymphocystivirus, Megalocytivirus and Ranavirus, are composed of species that infect vertebrates, and the other two, Chloriridovirus and Iridovirus, contain species that infect invertebrates. Until recently, the lack of genomic sequence data limited investigation of the evolutionary relationships between the invertebrate iridoviruses (IIVs) and vertebrate iridoviruses (VIVs), as well as the relationship of these viruses to those of the closely related family Ascoviridae, which only contains species that infect insects. To help clarify the phylogenetic relationships of these viruses, we recently published the annotated genome sequences of five additional IIV isolates. Here, using classical approaches of phylogeny via maximum likelihood, a Bayesian approach, and resolution of a core protein tree, we demonstrate that the invertebrate and vertebrate IV species constitute two lineages that diverged early during the evolution of the family Iridoviridae, before the emergence of the four IIV clades, previously referred to as Chloriridoviruses, Polyiridoviruses, Oligoiridoviruses and Crustaceoiridoviruses. In addition, we provide evidence that species of the family Ascoviridae have a more recent origin than most iridoviruses, emerging just before the differentiation between the Oligoiridoviruses and Crustaceoiridovirus clades. Our results also suggest that after emergence, based on their molecular clock, the ascoviruses evolved more quickly than their closest iridovirus relatives.

摘要

巨病毒目虹彩病毒科目前由五个属组成。其中三个属,即淋巴囊肿病毒属、肿大细胞病毒属和蛙病毒属,由感染脊椎动物的物种组成,另外两个属,即绿虹彩病毒属和虹彩病毒属,包含感染无脊椎动物的物种。直到最近,由于缺乏基因组序列数据,限制了对无脊椎动物虹彩病毒(IIV)和脊椎动物虹彩病毒(VIV)之间进化关系的研究,以及这些病毒与密切相关的正痘病毒科病毒之间的关系,正痘病毒科仅包含感染昆虫的物种。为了帮助阐明这些病毒的系统发育关系,我们最近发表了另外五种IIV分离株的注释基因组序列。在这里,我们使用通过最大似然法的经典系统发育方法、贝叶斯方法和核心蛋白树解析,证明无脊椎动物和脊椎动物虹彩病毒物种构成了两个谱系,它们在虹彩病毒科进化的早期就已经分化,早于之前被称为绿虹彩病毒、多虹彩病毒、寡虹彩病毒和甲壳动物虹彩病毒的四个IIV进化枝的出现。此外,我们提供的证据表明,正痘病毒科的物种起源比大多数虹彩病毒更近,在寡虹彩病毒和甲壳动物虹彩病毒进化枝分化之前就出现了。我们的结果还表明,基于分子钟,正痘病毒出现后比其最亲近的虹彩病毒亲属进化得更快。

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