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细胞组氨酸三联体核苷酸结合蛋白1与5'-O-硫代磷酸核苷及其衍生物的相互作用——对细胞脱硫过程的启示

Interactions of cellular histidine triad nucleotide binding protein 1 with nucleosides 5'-O-monophosphorothioate and their derivatives - Implication for desulfuration process in the cell.

作者信息

Krakowiak Agnieszka, Pawłowska Róża, Kocoń-Rębowska Beata, Dolot Rafał, Stec Wojciech J

机构信息

Centre of Molecular and Macromolecular Studies, Polish Academy of Sciences, Department of Bioorganic Chemistry, Lodz, Poland.

Centre of Molecular and Macromolecular Studies, Polish Academy of Sciences, Department of Bioorganic Chemistry, Lodz, Poland.

出版信息

Biochim Biophys Acta. 2014 Dec;1840(12):3357-66. doi: 10.1016/j.bbagen.2014.08.016. Epub 2014 Sep 6.

DOI:10.1016/j.bbagen.2014.08.016
PMID:25199874
Abstract

BACKGROUND

One of the activities of histidine triad nucleotide-binding protein 1 (Hint1) under in vitro conditions is the conversion of nucleoside 5'-O-phosphorothioate (NMPS) to its 5'-O-phosphate (NMP), which is accompanied by the release of hydrogen sulfide.

METHODS

Non-hydrolyzable derivatives of AMPS and dCMPS, each containing the residue able to form a covalent bond in nucleic acid-protein complexes via photocrosslinking (at 308nm), were applied at the complexing experiments with recombinant and cellular Hint1. The cellular lysates prepared after RNAi-mediated knockdown of Hint1 were incubated with AMPS and the level of desulfuration was measured.

RESULTS

Recombinant Hint1 and Hint1 present in the cellular lysate of A549 cells, formed complexes with the used substrate analogs. Computer modeling experiments, in which the ligand was docked at the binding pocket, confirmed that direct interactions between Hint1 and the screened analogs are possible. Using RNAi technology, we demonstrated lowered levels of AMPS substrate desulfuration in reactions that employed the cell lysates with a reduced Hint1 level.

CONCLUSIONS

The enzymatic conversion of AMPS to AMP occurred with the participation of cellular Hint1, the protein, which is present in all organisms.

GENERAL SIGNIFICANCE

The intracellular Hint1 could be responsible for the in vivo desulfuration of nucleosides-5'-monophosphorothioate, thus it can contribute to the phosphorothioate oligonucleotides metabolism. H2S released during this process may participate in several physiological processes, thus NMPSs can be precursors/donors of H2S in vivo and can be used to study the effects of this gas in biological systems. Moreover, the controlled delivery of (d)NMPSs into cells may be of medicinal utility.

摘要

背景

组氨酸三联体核苷酸结合蛋白1(Hint1)在体外条件下的一项活性是将核苷5'-O-硫代磷酸酯(NMPS)转化为其5'-O-磷酸酯(NMP),此过程伴随着硫化氢的释放。

方法

将AMPS和dCMPS的不可水解衍生物应用于与重组Hint1和细胞Hint1的复合实验,每种衍生物都含有能够通过光交联(在308nm)在核酸-蛋白质复合物中形成共价键的残基。在RNAi介导的Hint1敲低后制备的细胞裂解物与AMPS一起孵育,并测量脱硫水平。

结果

重组Hint1和存在于A549细胞裂解物中的Hint1与所用的底物类似物形成复合物。在计算机模拟实验中,将配体对接至结合口袋,证实Hint1与筛选出的类似物之间可能存在直接相互作用。使用RNAi技术,我们证明在使用Hint1水平降低的细胞裂解物的反应中,AMPS底物的脱硫水平降低。

结论

AMPS向AMP的酶促转化是在细胞Hint1(一种存在于所有生物体中的蛋白质)的参与下发生的。

一般意义

细胞内Hint1可能负责核苷5'-单硫代磷酸酯的体内脱硫,因此它可能有助于硫代磷酸酯寡核苷酸的代谢。在此过程中释放的H2S可能参与多种生理过程,因此NMPS在体内可能是H2S的前体/供体,可用于研究这种气体在生物系统中的作用。此外,将(d)NMPS可控地递送至细胞中可能具有药用价值。

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