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酶进化专题综述系列简介。

Introduction to the thematic minireview series on enzyme evolution.

机构信息

Department of Biological Chemistry, University of Michigan Medical School, Ann Arbor, Michigan 48109-0600.

出版信息

J Biol Chem. 2014 Oct 31;289(44):30196-30197. doi: 10.1074/jbc.R114.610766. Epub 2014 Sep 10.

Abstract

In this thematic minireview series, the JBC presents five provocative articles on Enzyme Evolution. The reviews discuss stimulating concepts that include the emergence of primordial catalysts at temperatures that were considerably warmer than present day ones and the impact of the cooling environment on the evolution of catalytic fitness and the preservation of catalysis-promoting conformational dynamics. They also discuss the use of Urzymes or invariant modules in enzyme superfamilies as paradigms for understanding the evolution of catalytic efficiency and specificity, the use of bioinformatics approaches to understand the roles of substrate ambiguity and catalytic promiscuity as drivers of evolution, and the challenges associated with assigning catalytic function as the number of superfamily members grows rapidly.

摘要

在这个专题综述系列中,JBC 发表了五篇关于酶进化的发人深省的文章。这些综述讨论了一些刺激的概念,包括在比现今温度高得多的温度下原始催化剂的出现,以及冷却环境对催化适应性和促进催化构象动力学的保存的影响。它们还讨论了 Urzymes 或酶超家族中的不变模块作为理解催化效率和特异性进化的范例,使用生物信息学方法来理解底物模糊性和催化混杂性作为进化驱动力的作用,以及随着超家族成员数量的快速增长,与分配催化功能相关的挑战。

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本文引用的文献

1
Enzyme promiscuity: engine of evolutionary innovation.
J Biol Chem. 2014 Oct 31;289(44):30229-30236. doi: 10.1074/jbc.R114.572990. Epub 2014 Sep 10.
2
New insights about enzyme evolution from large scale studies of sequence and structure relationships.
J Biol Chem. 2014 Oct 31;289(44):30221-30228. doi: 10.1074/jbc.R114.569350. Epub 2014 Sep 10.
3
Urzymology: experimental access to a key transition in the appearance of enzymes.
J Biol Chem. 2014 Oct 31;289(44):30213-30220. doi: 10.1074/jbc.R114.567495. Epub 2014 Sep 10.
4
Evolutionary aspects of enzyme dynamics.
J Biol Chem. 2014 Oct 31;289(44):30205-30212. doi: 10.1074/jbc.R114.565515. Epub 2014 Sep 10.
5
Massive thermal acceleration of the emergence of primordial chemistry, the incidence of spontaneous mutation, and the evolution of enzymes.
J Biol Chem. 2014 Oct 31;289(44):30198-30204. doi: 10.1074/jbc.R114.567081. Epub 2014 Sep 10.
6
Thematic minireview series on enzyme evolution in the post-genomic era.
J Biol Chem. 2012 Jan 2;287(1):1-2. doi: 10.1074/jbc.R111.307322. Epub 2011 Nov 8.

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