Bioinformatics Graduate Program and Boston University, Boston, Massachusetts 02215.
Department of Chemistry, Boston University, Boston, Massachusetts 02215 and.
J Biol Chem. 2014 Oct 31;289(44):30229-30236. doi: 10.1074/jbc.R114.572990. Epub 2014 Sep 10.
Catalytic promiscuity and substrate ambiguity are keys to evolvability, which in turn is pivotal to the successful acquisition of novel biological functions. Action on multiple substrates (substrate ambiguity) can be harnessed for performance of functions in the cell that supersede catalysis of a single metabolite. These functions include proofreading, scavenging of nutrients, removal of antimetabolites, balancing of metabolite pools, and establishing system redundancy. In this review, we present examples of enzymes that perform these cellular roles by leveraging substrate ambiguity and then present the structural features that support both specificity and ambiguity. We focus on the phosphatases of the haloalkanoate dehalogenase superfamily and the thioesterases of the hotdog fold superfamily.
催化的混杂性和底物的模糊性是进化的关键,而进化又是成功获得新的生物功能的关键。对多种底物的作用(底物模糊性)可以用于在细胞中执行超越单一代谢物催化的功能。这些功能包括校对、营养物质的清除、抗代谢物的去除、代谢物池的平衡以及建立系统冗余。在这篇综述中,我们介绍了一些通过利用底物模糊性来发挥这些细胞功能的酶的例子,然后介绍了支持特异性和模糊性的结构特征。我们重点介绍了卤代烷酸脱卤酶超家族的磷酸酶和热狗折叠超家族的硫酯酶。