Urban Philippe, Truan Gilles, Pompon Denis
Université de Toulouse, INSA, UPS, INP, LISBP, 135 Avenue de Rangueil, 31077 Toulouse, France ; INRA, UMR792 Ingénierie des Systèmes Biologiques et des Procédés, 31400 Toulouse, France ; CNRS, UMR 5504, 135 Avenue de Rangueil, 31400 Toulouse, France.
Biomed Res Int. 2014;2014:764102. doi: 10.1155/2014/764102. Epub 2014 Aug 26.
The promiscuity of a collection of enzymes consisting of 31 wild-type and synthetic variants of CYP1A enzymes was evaluated using a series of 14 steroids and 2 steroid-like chemicals, namely, nootkatone, a terpenoid, and mifepristone, a drug. For each enzyme-substrate couple, the initial steady-state velocity of metabolite formation was determined at a substrate saturating concentration. For that, a high-throughput approach was designed involving automatized incubations in 96-well microplate with sixteen 6-point kinetics per microplate and data acquisition using LC/MS system accepting 96-well microplate for injections. The resulting dataset was used for multivariate statistics aimed at sorting out the correlations existing between tested enzyme variants and ability to metabolize steroid substrates. Functional classifications of both CYP1A enzyme variants and steroid substrate structures were obtained allowing the delineation of global structural features for both substrate recognition and regioselectivity of oxidation.
使用14种类固醇和2种类固醇样化学品(即萜类化合物诺卡酮和药物米非司酮)对由31种野生型和合成变体组成的CYP1A酶集合的混杂性进行了评估。对于每一对酶-底物,在底物饱和浓度下测定代谢物形成的初始稳态速度。为此,设计了一种高通量方法,包括在96孔微孔板中进行自动化孵育,每个微孔板有16个6点动力学数据,并使用接受96孔微孔板进样的LC/MS系统进行数据采集。所得数据集用于多变量统计,旨在梳理出测试的酶变体与代谢类固醇底物能力之间存在的相关性。获得了CYP1A酶变体和类固醇底物结构的功能分类,从而能够描绘出底物识别和氧化区域选择性的整体结构特征。