Suppr超能文献

基于片段的ATAD2溴结构域筛选

Fragment-based screening of the bromodomain of ATAD2.

作者信息

Harner Mary J, Chauder Brian A, Phan Jason, Fesik Stephen W

机构信息

Department of Biochemistry, Vanderbilt University School of Medicine , 2215 Garland Avenue, 607 Light Hall, Nashville, Tennessee 37232-0146, United States.

出版信息

J Med Chem. 2014 Nov 26;57(22):9687-92. doi: 10.1021/jm501035j. Epub 2014 Nov 11.

Abstract

Cellular and genetic evidence suggest that inhibition of ATAD2 could be a useful strategy to treat several types of cancer. To discover small-molecule inhibitors of the bromodomain of ATAD2, we used a fragment-based approach. Fragment hits were identified using NMR spectroscopy, and ATAD2 was crystallized with three of the hits identified in the fragment screen.

摘要

细胞和遗传学证据表明,抑制ATAD2可能是治疗多种癌症的有效策略。为了发现ATAD2溴结构域的小分子抑制剂,我们采用了基于片段的方法。通过核磁共振光谱法鉴定出片段命中物,并使ATAD2与在片段筛选中鉴定出的其中三种命中物结晶。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9235/4255743/0bdd250a7a28/jm-2014-01035j_0001.jpg

相似文献

1
Fragment-based screening of the bromodomain of ATAD2.
J Med Chem. 2014 Nov 26;57(22):9687-92. doi: 10.1021/jm501035j. Epub 2014 Nov 11.
2
Disulfide bridge formation influences ligand recognition by the ATAD2 bromodomain.
Proteins. 2019 Feb;87(2):157-167. doi: 10.1002/prot.25636. Epub 2018 Dec 27.
5
Coordination of Di-Acetylated Histone Ligands by the ATAD2 Bromodomain.
Int J Mol Sci. 2021 Aug 24;22(17):9128. doi: 10.3390/ijms22179128.
6
Fragment-Based Discovery of Low-Micromolar ATAD2 Bromodomain Inhibitors.
J Med Chem. 2015 Jul 23;58(14):5649-73. doi: 10.1021/acs.jmedchem.5b00772. Epub 2015 Jul 9.
7
Oncogenic potential of ATAD2 in stomach cancer and insights into the protein-protein interactions at its AAA + ATPase domain and bromodomain.
J Biomol Struct Dyn. 2022 Aug;40(12):5606-5622. doi: 10.1080/07391102.2021.1871959. Epub 2021 Jan 13.
8
Impact of Combinatorial Histone Modifications on Acetyllysine Recognition by the ATAD2 and ATAD2B Bromodomains.
J Med Chem. 2024 May 23;67(10):8186-8200. doi: 10.1021/acs.jmedchem.4c00210. Epub 2024 May 11.
9
Chemical synthesis of the ATAD2 bromodomain.
Proc Natl Acad Sci U S A. 2014 Feb 25;111(8):2891-6. doi: 10.1073/pnas.1400556111. Epub 2014 Feb 10.
10
Discovery of a Potent and Selective ATAD2 Bromodomain Inhibitor with Antiproliferative Activity in Breast Cancer Models.
J Med Chem. 2022 Feb 24;65(4):3306-3331. doi: 10.1021/acs.jmedchem.1c01871. Epub 2022 Feb 8.

引用本文的文献

1
Drugging Challenging Cancer Targets Using Fragment-Based Methods.
Chem Rev. 2025 Mar 26;125(6):3586-3594. doi: 10.1021/acs.chemrev.4c00892. Epub 2025 Mar 5.
2
Thermal Titration Molecular Dynamics: The Revenge of the Fragments.
J Chem Inf Model. 2025 Feb 10;65(3):1492-1513. doi: 10.1021/acs.jcim.4c01681. Epub 2025 Jan 21.
3
Screening Ultra-Large Encoded Compound Libraries Leads to Novel Protein-Ligand Interactions and High Selectivity.
J Med Chem. 2024 Jan 25;67(2):864-884. doi: 10.1021/acs.jmedchem.3c01861. Epub 2024 Jan 10.
4
Fragment-based design, synthesis and biological evaluation of theophylline derivatives as ATAD2 inhibitors in BT-549 cells.
J Enzyme Inhib Med Chem. 2023 Dec;38(1):2242601. doi: 10.1080/14756366.2023.2242601.
5
Recent progress and structural analyses of domain-selective BET inhibitors.
Med Res Rev. 2023 Jul;43(4):972-1018. doi: 10.1002/med.21942. Epub 2023 Mar 27.
6
Accounting for Solvation Correlation Effects on the Thermodynamics of Water Networks in Protein Cavities.
J Chem Inf Model. 2023 Mar 27;63(6):1794-1805. doi: 10.1021/acs.jcim.2c01610. Epub 2023 Mar 14.
7
ATPase family AAA domain-containing protein 2 (ATAD2): From an epigenetic modulator to cancer therapeutic target.
Theranostics. 2023 Jan 1;13(2):787-809. doi: 10.7150/thno.78840. eCollection 2023.
8
Fragment-Sized Thiazoles in Fragment-Based Drug Discovery Campaigns: Friend or Foe?
ACS Med Chem Lett. 2022 Nov 3;13(12):1905-1910. doi: 10.1021/acsmedchemlett.2c00429. eCollection 2022 Dec 8.
9
AAA ATPases as therapeutic targets: Structure, functions, and small-molecule inhibitors.
Eur J Med Chem. 2021 Jul 5;219:113446. doi: 10.1016/j.ejmech.2021.113446. Epub 2021 Apr 10.
10
Targeting TRIM Proteins: A Quest towards Drugging an Emerging Protein Class.
Chembiochem. 2021 Jun 15;22(12):2011-2031. doi: 10.1002/cbic.202000787. Epub 2021 Mar 18.

本文引用的文献

1
Targeting bromodomains: epigenetic readers of lysine acetylation.
Nat Rev Drug Discov. 2014 May;13(5):337-56. doi: 10.1038/nrd4286. Epub 2014 Apr 22.
2
Significance of PRO2000/ANCCA expression, a novel proliferation-associated protein in hepatocellular carcinoma.
Cancer Cell Int. 2014 Apr 4;14:33. doi: 10.1186/1475-2867-14-33. eCollection 2014.
3
Acetyl-lysine binding site of bromodomain-containing protein 4 (BRD4) interacts with diverse kinase inhibitors.
ACS Chem Biol. 2014 May 16;9(5):1160-71. doi: 10.1021/cb500072z. Epub 2014 Mar 13.
4
Targeting low-druggability bromodomains: fragment based screening and inhibitor design against the BAZ2B bromodomain.
J Med Chem. 2013 Dec 27;56(24):10183-7. doi: 10.1021/jm401582c. Epub 2013 Dec 13.
5
Fragment-based drug discovery using NMR spectroscopy.
J Biomol NMR. 2013 Jun;56(2):65-75. doi: 10.1007/s10858-013-9740-z. Epub 2013 May 18.
6
Druggability analysis and structural classification of bromodomain acetyl-lysine binding sites.
J Med Chem. 2012 Sep 13;55(17):7346-59. doi: 10.1021/jm300346w. Epub 2012 Jul 12.
7
Histone recognition and large-scale structural analysis of the human bromodomain family.
Cell. 2012 Mar 30;149(1):214-31. doi: 10.1016/j.cell.2012.02.013.
9
Chromatin loading of E2F-MLL complex by cancer-associated coregulator ANCCA via reading a specific histone mark.
Mol Cell Biol. 2010 Nov;30(22):5260-72. doi: 10.1128/MCB.00484-10. Epub 2010 Sep 20.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验