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食用竹叶吊钟(六出花科:百合目)的完整质体基因组序列

The complete plastid genome sequence of Bomarea edulis (Alstroemeriaceae: Liliales).

作者信息

Kim Jung Sung, Kim Hyoung Tae, Yoon Chang Young, Kim Joo-Hwan

机构信息

a Department of Life Science , Gachon University , Seongnam , Republic of Korea and.

b Department of Biotechnology , Shingyeong University , Hwaseong , Republic of Korea.

出版信息

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 May;27(3):1869-70. doi: 10.3109/19401736.2014.971264. Epub 2014 Oct 16.

DOI:10.3109/19401736.2014.971264
PMID:25319309
Abstract

Bomarea, a member of the family Alstroemeriaceae, is distributed from Chile to Mexico and includes approximately 120 species. Recent molecular phylogenetic studies have clarified the monophyly of the family within the order Liliales and the sister relationship with the family Colchicaceae. At this time, five plastid genomes of Liliales have been analyzed at the familial level. To examine plastid genome variation at the generic level, we sequenced the plastid genome of Bomarea edulis, which is the most widely distributed species in the genus, and compared it with Alstroemeria aurea. The plastid genome sequence of B. edulis was 154,925 bp in length with a similar structure as A. aurea, excluding the IR-LSC junction. Ycf68 and infA were pseudogenes caused by frameshift mutations, and the ycf15 gene was deleted, similar to A. aurea.

摘要

竹叶吊钟属是六出花科的一个成员,分布于从智利到墨西哥的地区,约有120个物种。最近的分子系统发育研究阐明了该科在百合目内的单系性以及与秋水仙科的姐妹关系。目前,已在科级水平上分析了五个百合目植物的质体基因组。为了研究属级水平上的质体基因组变异,我们对竹叶吊钟属中分布最广的物种可食竹叶吊钟的质体基因组进行了测序,并将其与金黄六出花进行比较。可食竹叶吊钟的质体基因组序列长度为154,925 bp,除了IR-LSC边界外,其结构与金黄六出花相似。Ycf68和infA是由移码突变导致的假基因,并且ycf15基因缺失,这与金黄六出花相似。

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