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RecBCD酶解开DNA的链特异性

Strand specificity of DNA unwinding by RecBCD enzyme.

作者信息

Braedt G, Smith G R

机构信息

Fred Hutchinson Cancer Research Center, Seattle, WA 98104.

出版信息

Proc Natl Acad Sci U S A. 1989 Feb;86(3):871-5. doi: 10.1073/pnas.86.3.871.

DOI:10.1073/pnas.86.3.871
PMID:2536935
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC286580/
Abstract

RecBCD enzyme (exonuclease V) of Escherichia coli unwinds DNA, frequently forming asymmetric structures with two single-stranded tails of unequal length abutting a single-stranded loop at the junction with double-stranded DNA. Their lengths are consistent with the longer tail being one strand of the duplex and the loop plus the shorter tail being the other strand. The strand polarity of the unwinding was determined by labeling the 3' or 5' ends of duplex DNA with biotinylated nucleotides, reacting the DNA with RecBCD enzyme, and distinguishing the labeled ends, in the electron microscope, by their binding to streptavidin-gold complex. The shorter tail was formed from the DNA strand with its 3' terminus at the duplex end where RecBCD enzyme entered. We conclude that RecBCD enzyme unwinds DNA by forming a loop on the strand with a 3' end at the entry point. This result is concordant with a previously proposed model of recombination, which we discuss.

摘要

大肠杆菌的RecBCD酶(外切核酸酶V)能解开DNA,经常形成不对称结构,在与双链DNA的连接处有两条长度不等的单链尾巴邻接一个单链环。它们的长度与较长的尾巴是双链中的一条链,而环加较短的尾巴是另一条链一致。通过用生物素化核苷酸标记双链DNA的3'或5'末端,使DNA与RecBCD酶反应,并在电子显微镜下通过它们与链霉亲和素-金复合物的结合来区分标记末端,从而确定了解旋的链极性。较短的尾巴由其3'末端位于RecBCD酶进入的双链末端的DNA链形成。我们得出结论,RecBCD酶通过在进入点具有3'末端的链上形成一个环来解开DNA。这一结果与之前提出的重组模型一致,我们将对此进行讨论。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ece6/286580/baabd1110c70/pnas00243-0126-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ece6/286580/7cc50a7ae080/pnas00243-0126-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ece6/286580/8542af871a7d/pnas00243-0126-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ece6/286580/baabd1110c70/pnas00243-0126-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ece6/286580/7cc50a7ae080/pnas00243-0126-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ece6/286580/8542af871a7d/pnas00243-0126-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ece6/286580/baabd1110c70/pnas00243-0126-c.jpg

相似文献

1
Strand specificity of DNA unwinding by RecBCD enzyme.RecBCD酶解开DNA的链特异性
Proc Natl Acad Sci U S A. 1989 Feb;86(3):871-5. doi: 10.1073/pnas.86.3.871.
2
Strand-specific binding to duplex DNA ends by the subunits of the Escherichia coli RecBCD enzyme.大肠杆菌RecBCD酶的亚基对双链DNA末端的链特异性结合。
J Mol Biol. 1993 Jan 5;229(1):67-78. doi: 10.1006/jmbi.1993.1008.
3
Substrate specificity of the DNA unwinding activity of the RecBC enzyme of Escherichia coli.大肠杆菌RecBC酶DNA解旋活性的底物特异性
J Mol Biol. 1985 Sep 20;185(2):431-43. doi: 10.1016/0022-2836(85)90414-0.
4
RecBCD enzyme is a bipolar DNA helicase.RecBCD酶是一种双极DNA解旋酶。
Nature. 2003 Jun 19;423(6942):893-7. doi: 10.1038/nature01673.
5
The RecBCD enzyme initiation complex for DNA unwinding: enzyme positioning and DNA opening.用于DNA解旋的RecBCD酶起始复合物:酶的定位与DNA解链
J Mol Biol. 1997 Oct 10;272(5):699-715. doi: 10.1006/jmbi.1997.1259.
6
Strand specificity of nicking of DNA at Chi sites by RecBCD enzyme. Modulation by ATP and magnesium levels.RecBCD酶在Chi位点对DNA切口的链特异性。ATP和镁离子水平的调节作用。
J Biol Chem. 1995 Oct 13;270(41):24459-67. doi: 10.1074/jbc.270.41.24459.
7
A stimulatory RNA associated with RecBCD enzyme.一种与RecBCD酶相关的刺激性RNA。
Nucleic Acids Res. 1998 May 1;26(9):2125-31. doi: 10.1093/nar/26.9.2125.
8
RecBCD enzyme is a DNA helicase with fast and slow motors of opposite polarity.RecBCD酶是一种具有相反极性的快速和慢速马达的DNA解旋酶。
Nature. 2003 Jun 19;423(6942):889-93. doi: 10.1038/nature01674.
9
SSB protein controls RecBCD enzyme nuclease activity during unwinding: a new role for looped intermediates.SSB蛋白在解旋过程中控制RecBCD酶的核酸酶活性:环状中间体的新作用。
J Mol Biol. 1998 Sep 18;282(2):275-85. doi: 10.1006/jmbi.1998.2013.
10
The recombination hotspot chi is a regulatory sequence that acts by attenuating the nuclease activity of the E. coli RecBCD enzyme.重组热点chi是一种调控序列,其作用是减弱大肠杆菌RecBCD酶的核酸酶活性。
Cell. 1993 Apr 9;73(1):87-96. doi: 10.1016/0092-8674(93)90162-j.

引用本文的文献

1
Chi hotspot control of RecBCD helicase-nuclease by long-range intramolecular signaling.Chi 热点通过长程分子内信号控制 RecBCD 解旋酶-核酸酶。
Sci Rep. 2020 Nov 5;10(1):19415. doi: 10.1038/s41598-020-73078-0.
2
RecBCD is required to complete chromosomal replication: Implications for double-strand break frequencies and repair mechanisms.RecBCD蛋白是完成染色体复制所必需的:对双链断裂频率和修复机制的影响。
DNA Repair (Amst). 2015 Aug;32:86-95. doi: 10.1016/j.dnarep.2015.04.018. Epub 2015 May 2.
3
RecBCD enzyme and the repair of double-stranded DNA breaks.

本文引用的文献

1
A unified mechanism for the nuclease and unwinding activities of the recBC enzyme of Escherichia coli.大肠杆菌recBC酶核酸酶和解旋活性的统一机制。
J Biol Chem. 1982 Mar 10;257(5):2641-8.
2
Homologous pairing and topological linkage of DNA molecules by combined action of E. coli RecA protein and topoisomerase I.大肠杆菌RecA蛋白与拓扑异构酶I共同作用实现DNA分子的同源配对和拓扑连接
Cell. 1981 Apr;24(1):213-23. doi: 10.1016/0092-8674(81)90517-1.
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Unwinding and rewinding of DNA by the RecBC enzyme.RecBC酶对DNA的解旋和重新缠绕。
RecBCD酶与双链DNA断裂的修复
Microbiol Mol Biol Rev. 2008 Dec;72(4):642-71, Table of Contents. doi: 10.1128/MMBR.00020-08.
4
RecBCD enzyme switches lead motor subunits in response to chi recognition.RecBCD酶在识别χ序列时会切换主导的运动亚基。
Cell. 2007 Nov 16;131(4):694-705. doi: 10.1016/j.cell.2007.09.023.
5
Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda.大肠杆菌和噬菌体λ中DNA损伤的重组修复
Microbiol Mol Biol Rev. 1999 Dec;63(4):751-813, table of contents. doi: 10.1128/MMBR.63.4.751-813.1999.
6
The RecBC enzyme loads RecA protein onto ssDNA asymmetrically and independently of chi, resulting in constitutive recombination activation.RecBC酶将RecA蛋白不对称地加载到单链DNA上,且不依赖于χ序列,从而导致组成型重组激活。
Genes Dev. 1999 Apr 1;13(7):901-11. doi: 10.1101/gad.13.7.901.
7
Regulation of homologous recombination: Chi inactivates RecBCD enzyme by disassembly of the three subunits.同源重组的调控:Chi通过拆解三个亚基使RecBCD酶失活。
Genes Dev. 1999 Apr 1;13(7):890-900. doi: 10.1101/gad.13.7.890.
8
Biochemistry of homologous recombination in Escherichia coli.大肠杆菌中同源重组的生物化学
Microbiol Rev. 1994 Sep;58(3):401-65. doi: 10.1128/mr.58.3.401-465.1994.
9
The single-stranded DNA-binding protein of Escherichia coli.大肠杆菌的单链DNA结合蛋白。
Microbiol Rev. 1990 Dec;54(4):342-80. doi: 10.1128/mr.54.4.342-380.1990.
Cell. 1980 Nov;22(2 Pt 2):447-57. doi: 10.1016/0092-8674(80)90355-4.
4
RecBC enzyme nicking at Chi sites during DNA unwinding: location and orientation-dependence of the cutting.RecBC酶在DNA解旋过程中于Chi位点处产生切口:切割的位置和方向依赖性
Cell. 1985 May;41(1):153-63. doi: 10.1016/0092-8674(85)90070-4.
5
Chi-dependent DNA strand cleavage by RecBC enzyme.RecBC酶介导的依赖Chi的DNA链切割
Cell. 1985 May;41(1):145-51. doi: 10.1016/0092-8674(85)90069-8.
6
3' homologous free ends are required for stable joint molecule formation by the RecA and single-stranded binding proteins of Escherichia coli.3'同源自由末端是大肠杆菌的RecA和单链结合蛋白形成稳定连接分子所必需的。
Proc Natl Acad Sci U S A. 1987 Feb;84(3):690-4. doi: 10.1073/pnas.84.3.690.
7
recD: the gene for an essential third subunit of exonuclease V.
Proc Natl Acad Sci U S A. 1986 Aug;83(15):5558-62. doi: 10.1073/pnas.83.15.5558.
8
Mechanism and control of homologous recombination in Escherichia coli.大肠杆菌中同源重组的机制与调控
Annu Rev Genet. 1987;21:179-201. doi: 10.1146/annurev.ge.21.120187.001143.
9
Enzymes of general recombination.一般重组酶。
Annu Rev Biochem. 1987;56:229-62. doi: 10.1146/annurev.bi.56.070187.001305.
10
Substrate specificity of the DNA unwinding activity of the RecBC enzyme of Escherichia coli.大肠杆菌RecBC酶DNA解旋活性的底物特异性
J Mol Biol. 1985 Sep 20;185(2):431-43. doi: 10.1016/0022-2836(85)90414-0.