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不恰当的动力学模型是否正在阻碍药物研发?

Are improper kinetic models hampering drug development?

作者信息

Walsh Ryan

机构信息

Department of Chemistry, Carleton University , Ottawa, ON , Canada.

出版信息

PeerJ. 2014 Oct 28;2:e649. doi: 10.7717/peerj.649. eCollection 2014.

Abstract

Reproducibility of biological data is a significant problem in research today. One potential contributor to this, which has received little attention, is the over complication of enzyme kinetic inhibition models. The over complication of inhibitory models stems from the common use of the inhibitory term (1 + [I]/Ki ), an equilibrium binding term that does not distinguish between inhibitor binding and inhibitory effect. Since its initial appearance in the literature, around a century ago, the perceived mechanistic methods used in its production have spurred countless inhibitory equations. These equations are overly complex and are seldom compared to each other, which has destroyed their usefulness resulting in the proliferation and regulatory acceptance of simpler models such as IC50s for drug characterization. However, empirical analysis of inhibitory data recognizing the clear distinctions between inhibitor binding and inhibitory effect can produce simple logical inhibition models. In contrast to the common divergent practice of generating new inhibitory models for every inhibitory situation that presents itself. The empirical approach to inhibition modeling presented here is broadly applicable allowing easy comparison and rational analysis of drug interactions. To demonstrate this, a simple kinetic model of DAPT, a compound that both activates and inhibits γ-secretase is examined using excel. The empirical kinetic method described here provides an improved way of probing disease mechanisms, expanding the investigation of possible therapeutic interventions.

摘要

生物数据的可重复性是当今研究中的一个重大问题。造成这一问题的一个潜在因素,且很少受到关注的是酶动力学抑制模型过于复杂。抑制模型的过度复杂源于抑制项(1 + [I]/Ki)的普遍使用,这是一个平衡结合项,无法区分抑制剂结合和抑制作用。自大约一个世纪前首次出现在文献中以来,其产生过程中所采用的所谓机理方法催生了无数的抑制方程。这些方程过于复杂,而且很少相互比较,这使得它们变得毫无用处,导致诸如IC50等更简单的模型在药物表征方面大量出现并被监管部门接受。然而,对抑制数据进行实证分析,认识到抑制剂结合和抑制作用之间的明显区别,可以产生简单合理的抑制模型。这与针对每一种出现的抑制情况生成新的抑制模型这种常见的不同做法形成对比。这里介绍的抑制建模的实证方法具有广泛的适用性,便于对药物相互作用进行比较和合理分析。为了证明这一点,使用Excel对一种既能激活又能抑制γ-分泌酶的化合物DAPT的简单动力学模型进行了研究。这里描述的实证动力学方法为探究疾病机制提供了一种改进的方法,扩展了对可能的治疗干预措施的研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/234a/4217195/03cedd6c1fe8/peerj-02-649-g001.jpg

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