• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

一种用于分析酵母核糖体DNA突变的系统。

A system for the analysis of yeast ribosomal DNA mutations.

作者信息

Musters W, Venema J, van der Linden G, van Heerikhuizen H, Klootwijk J, Planta R J

机构信息

Biochemisch Laboratorium, Vrije Universiteit, Amsterdam, The Netherlands.

出版信息

Mol Cell Biol. 1989 Feb;9(2):551-9. doi: 10.1128/mcb.9.2.551-559.1989.

DOI:10.1128/mcb.9.2.551-559.1989
PMID:2540422
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC362631/
Abstract

To develop a system for the analysis of eucaryotic ribosomal DNA (rDNA) mutations, we cloned a complete, transcriptionally active rDNA unit from the yeast Saccharomyces cerevisiae on a centromere-containing yeast plasmid. To distinguish the plasmid-derived ribosomal transcripts from those encoded by the rDNA locus, we inserted a tag of 18 base pairs within the first expansion segment of domain I of the 26S rRNA gene. We demonstrate that this insertion behaves as a neutral mutation since tagged 26S rRNA is normally processed and assembled into functional ribosomal subunits. This system allows us to study the effect of subsequent mutations within the tagged rDNA unit on the biosynthesis and function of the rRNA. As a first application, we wanted to ascertain whether the assembly of a 60S subunit is dependent on the presence in cis of an intact 17S rRNA gene. We found that a deletion of two-thirds of the 17S rRNA gene has no effect on the accumulation of active 60S subunits derived from the same operon. On the other hand, deletions within the second domain of the 26S rRNA gene completely abolished the accumulation of mature 26S rRNA.

摘要

为了开发一种用于分析真核生物核糖体DNA(rDNA)突变的系统,我们在一个含着丝粒的酵母质粒上克隆了来自酿酒酵母的完整、具有转录活性的rDNA单元。为了区分质粒衍生的核糖体转录本与rDNA基因座编码的转录本,我们在26S rRNA基因第一结构域的第一个扩展片段内插入了一个18个碱基对的标签。我们证明这种插入表现为中性突变,因为带标签的26S rRNA通常会被加工并组装成功能性核糖体亚基。这个系统使我们能够研究带标签的rDNA单元内后续突变对rRNA生物合成和功能的影响。作为首次应用,我们想确定60S亚基的组装是否依赖于顺式存在的完整17S rRNA基因。我们发现,17S rRNA基因三分之二的缺失对来自同一操纵子的活性60S亚基的积累没有影响。另一方面,26S rRNA基因第二结构域内的缺失完全消除了成熟26S rRNA的积累。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd0/362631/b9b5d8c30f49/molcellb00050-0212-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd0/362631/67972ac26686/molcellb00050-0208-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd0/362631/86724f2f85b1/molcellb00050-0209-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd0/362631/4d2cedb53675/molcellb00050-0211-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd0/362631/35b9efb4043b/molcellb00050-0211-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd0/362631/0d3dec6757f0/molcellb00050-0211-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd0/362631/0aacbec14e47/molcellb00050-0212-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd0/362631/b9b5d8c30f49/molcellb00050-0212-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd0/362631/67972ac26686/molcellb00050-0208-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd0/362631/86724f2f85b1/molcellb00050-0209-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd0/362631/4d2cedb53675/molcellb00050-0211-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd0/362631/35b9efb4043b/molcellb00050-0211-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd0/362631/0d3dec6757f0/molcellb00050-0211-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd0/362631/0aacbec14e47/molcellb00050-0212-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd0/362631/b9b5d8c30f49/molcellb00050-0212-b.jpg

相似文献

1
A system for the analysis of yeast ribosomal DNA mutations.一种用于分析酵母核糖体DNA突变的系统。
Mol Cell Biol. 1989 Feb;9(2):551-9. doi: 10.1128/mcb.9.2.551-559.1989.
2
Functional analysis of transcribed spacers of yeast ribosomal DNA.酵母核糖体DNA转录间隔区的功能分析
EMBO J. 1990 Dec;9(12):3989-96. doi: 10.1002/j.1460-2075.1990.tb07620.x.
3
Expression of yeast 5S RNA is independent of the rDNA enhancer region.酵母5S RNA的表达独立于核糖体DNA增强子区域。
Nucleic Acids Res. 1990 Jul 25;18(14):4179-84. doi: 10.1093/nar/18.14.4179.
4
Sequences within the spacer region of yeast rRNA cistrons that stimulate 35S rRNA synthesis in vivo mediate RNA polymerase I-dependent promoter and terminator activities.酵母rRNA顺反子间隔区中在体内刺激35S rRNA合成的序列介导RNA聚合酶I依赖性启动子和终止子活性。
Mol Cell Biol. 1989 Mar;9(3):1243-54. doi: 10.1128/mcb.9.3.1243-1254.1989.
5
Interaction of ribosomal proteins L25 from yeast and EL23 from E. coli with yeast 26S and mouse 28S rRNA.酵母核糖体蛋白L25和大肠杆菌EL23与酵母26S及小鼠28S rRNA的相互作用。
Biochimie. 1987 Sep;69(9):939-48. doi: 10.1016/0300-9084(87)90227-6.
6
Yeast precursor ribosomal RNA. Molecular cloning and probing the higher-order structure of the internal transcribed spacer I by kethoxal and dimethylsulfate modification.酵母前体核糖体RNA。通过乙二醛和硫酸二甲酯修饰对转录间隔区I的高级结构进行分子克隆和探测。
J Mol Biol. 1990 Jan 20;211(2):305-20. doi: 10.1016/0022-2836(90)90353-N.
7
Separate structural elements within internal transcribed spacer 1 of Saccharomyces cerevisiae precursor ribosomal RNA direct the formation of 17S and 26S rRNA.酿酒酵母前体核糖体RNA的内转录间隔区1中的独立结构元件指导17S和26S rRNA的形成。
Nucleic Acids Res. 1994 Mar 25;22(6):912-9. doi: 10.1093/nar/22.6.912.
8
Identification of a site required for DNA replication fork blocking activity in the rRNA gene cluster in Saccharomyces cerevisiae.酿酒酵母rRNA基因簇中DNA复制叉阻断活性所需位点的鉴定。
Mol Gen Genet. 1992 Jun;233(3):355-62. doi: 10.1007/BF00265431.
9
Functional analysis of internal transcribed spacer 2 of Saccharomyces cerevisiae ribosomal DNA.酿酒酵母核糖体DNA内转录间隔区2的功能分析
J Mol Biol. 1992 Feb 20;223(4):899-910. doi: 10.1016/0022-2836(92)90251-e.
10
Organization of ribosomal RNA genes in Alternaria alternata Japanese pear pathotype, a host-selective AK-toxin-producing fungus.链格孢菌日本梨致病型(一种产生寄主选择性AK毒素的真菌)核糖体RNA基因的组织形式
Curr Genet. 1989 Oct;16(4):267-72. doi: 10.1007/BF00422113.

引用本文的文献

1
The kinase Rio1 and a ribosome collision-dependent decay pathway survey the integrity of 18S rRNA cleavage.激酶 Rio1 和核糖体碰撞依赖性衰变途径检测 18S rRNA 切割的完整性。
PLoS Biol. 2024 Apr 25;22(4):e3001767. doi: 10.1371/journal.pbio.3001767. eCollection 2024 Apr.
2
Production of nascent ribosome precursors within the nucleolar microenvironment of Saccharomyces cerevisiae.酵母细胞核仁微环境中新生核糖体前体的生成。
Genetics. 2022 Jul 4;221(3). doi: 10.1093/genetics/iyac070.
3
VELCRO-IP RNA-seq reveals ribosome expansion segment function in translation genome-wide.

本文引用的文献

1
The primary and secondary structure of yeast 26S rRNA.酵母26S核糖体RNA的一级和二级结构。
Nucleic Acids Res. 1981 Dec 21;9(24):6935-52. doi: 10.1093/nar/9.24.6935.
2
Repeated genes in eukaryotes.真核生物中的重复基因。
Annu Rev Biochem. 1980;49:727-64. doi: 10.1146/annurev.bi.49.070180.003455.
3
Sporulation and rna2 lower ribosomal protein mRNA levels by different mechanisms in Saccharomyces cerevisiae.在酿酒酵母中,孢子形成和rna2通过不同机制降低核糖体蛋白mRNA水平。
VELCRO-IP RNA-seq 揭示核糖体扩展片段在翻译全基因组中的功能。
Cell Rep. 2021 Jan 19;34(3):108629. doi: 10.1016/j.celrep.2020.108629.
4
Gene- and Species-Specific Hox mRNA Translation by Ribosome Expansion Segments.核糖体扩展片段对基因和物种特异性 Hox mRNA 的翻译。
Mol Cell. 2020 Dec 17;80(6):980-995.e13. doi: 10.1016/j.molcel.2020.10.023. Epub 2020 Nov 16.
5
A versatile cis-acting element reporter system to study the function, maturation and stability of ribosomal RNA mutants in archaea.一种多功能顺式作用元件报告系统,用于研究古菌中核糖体 RNA 突变体的功能、成熟和稳定性。
Nucleic Acids Res. 2020 Feb 28;48(4):2073-2090. doi: 10.1093/nar/gkz1156.
6
Eukaryote-specific rRNA expansion segments function in ribosome biogenesis.真核生物特有的核糖体RNA扩展片段在核糖体生物合成中发挥作用。
RNA. 2016 Aug;22(8):1153-62. doi: 10.1261/rna.056705.116. Epub 2016 Jun 17.
7
A role for ubiquitin in the clearance of nonfunctional rRNAs.泛素在清除无功能核糖体RNA中的作用。
Genes Dev. 2009 Apr 15;23(8):963-74. doi: 10.1101/gad.1775609.
8
Active destruction of defective ribosomes by a ubiquitin ligase involved in DNA repair.参与DNA修复的泛素连接酶对缺陷核糖体的主动破坏。
Genes Dev. 2009 Apr 15;23(8):891-5. doi: 10.1101/gad.1800509.
9
Engineering the rRNA decoding site of eukaryotic cytosolic ribosomes in bacteria.在细菌中改造真核细胞胞质核糖体的rRNA解码位点。
Nucleic Acids Res. 2007;35(18):6086-93. doi: 10.1093/nar/gkm658. Epub 2007 Aug 30.
10
Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements.西方蜜蜂(昆虫纲:膜翅目)的核(18S、5.8S、28S和5S)和线粒体(12S和16S)rRNA基因的特征:结构、组织及反转录转座元件
Insect Mol Biol. 2006 Oct;15(5):657-86. doi: 10.1111/j.1365-2583.2006.00689.x.
Mol Cell Biol. 1982 Oct;2(10):1199-204. doi: 10.1128/mcb.2.10.1199-1204.1982.
4
Sequence analysis of 28S ribosomal DNA from the amphibian Xenopus laevis.来自非洲爪蟾(Xenopus laevis)的28S核糖体DNA序列分析。
Nucleic Acids Res. 1983 Nov 25;11(22):7795-817. doi: 10.1093/nar/11.22.7795.
5
Effect of topological constraint on transcription of ribosomal DNA in Xenopus oocytes. Comparison of plasmid and endogenous genes.拓扑限制对非洲爪蟾卵母细胞核糖体DNA转录的影响。质粒基因与内源基因的比较。
J Mol Biol. 1984 Mar 25;174(1):121-39. doi: 10.1016/0022-2836(84)90368-1.
6
A systemic DNA sequencing strategy.一种系统性DNA测序策略。
J Mol Biol. 1982 Jul 5;158(3):539-49. doi: 10.1016/0022-2836(82)90213-3.
7
Sequencing end-labeled DNA with base-specific chemical cleavages.通过碱基特异性化学切割对末端标记的DNA进行测序。
Methods Enzymol. 1980;65(1):499-560. doi: 10.1016/s0076-6879(80)65059-9.
8
The major promoter element of rRNA transcription in yeast lies 2 kb upstream.酵母中rRNA转录的主要启动子元件位于上游2 kb处。
Cell. 1984 Dec;39(3 Pt 2):663-73. doi: 10.1016/0092-8674(84)90473-2.
9
Evolution of yeast ribosomal DNA: molecular cloning of the rDNA units of Kluyveromyces lactis and Hansenula wingei and their comparison with the rDNA units of other Saccharomycetoideae.酵母核糖体DNA的进化:乳酸克鲁维酵母和温吉汉逊酵母rDNA单位的分子克隆及其与其他酵母亚科rDNA单位的比较
Mol Gen Genet. 1984;195(1-2):116-25. doi: 10.1007/BF00332733.
10
Effect of RP51 gene dosage alterations on ribosome synthesis in Saccharomyces cerevisiae.RP51基因剂量改变对酿酒酵母核糖体合成的影响。
Mol Cell Biol. 1985 Dec;5(12):3429-35. doi: 10.1128/mcb.5.12.3429-3435.1985.