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对与主要神经精神疾病相关的共同和不同遗传成分的神经信息学分析。

Neuroinformatic analyses of common and distinct genetic components associated with major neuropsychiatric disorders.

作者信息

Lotan Amit, Fenckova Michaela, Bralten Janita, Alttoa Aet, Dixson Luanna, Williams Robert W, van der Voet Monique

机构信息

Department of Adult Psychiatry and the Biological Psychiatry Laboratory, Hadassah-Hebrew University Medical Center Jerusalem, Israel.

Department of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center Nijmegen, Netherlands.

出版信息

Front Neurosci. 2014 Nov 6;8:331. doi: 10.3389/fnins.2014.00331. eCollection 2014.

Abstract

Major neuropsychiatric disorders are highly heritable, with mounting evidence suggesting that these disorders share overlapping sets of molecular and cellular underpinnings. In the current article we systematically test the degree of genetic commonality across six major neuropsychiatric disorders-attention deficit hyperactivity disorder (ADHD), anxiety disorders (Anx), autistic spectrum disorders (ASD), bipolar disorder (BD), major depressive disorder (MDD), and schizophrenia (SCZ). We curated a well-vetted list of genes based on large-scale human genetic studies based on the NHGRI catalog of published genome-wide association studies (GWAS). A total of 180 genes were accepted into the analysis on the basis of low but liberal GWAS p-values (<10(-5)). 22% of genes overlapped two or more disorders. The most widely shared subset of genes-common to five of six disorders-included ANK3, AS3MT, CACNA1C, CACNB2, CNNM2, CSMD1, DPCR1, ITIH3, NT5C2, PPP1R11, SYNE1, TCF4, TENM4, TRIM26, and ZNRD1. Using a suite of neuroinformatic resources, we showed that many of the shared genes are implicated in the postsynaptic density (PSD), expressed in immune tissues and co-expressed in developing human brain. Using a translational cross-species approach, we detected two distinct genetic components that were both shared by each of the six disorders; the 1st component is involved in CNS development, neural projections and synaptic transmission, while the 2nd is implicated in various cytoplasmic organelles and cellular processes. Combined, these genetic components account for 20-30% of the genetic load. The remaining risk is conferred by distinct, disorder-specific variants. Our systematic comparative analysis of shared and unique genetic factors highlights key gene sets and molecular processes that may ultimately translate into improved diagnosis and treatment of these debilitating disorders.

摘要

主要的神经精神疾病具有高度遗传性,越来越多的证据表明,这些疾病有着重叠的分子和细胞基础。在本文中,我们系统地测试了六种主要神经精神疾病——注意力缺陷多动障碍(ADHD)、焦虑症(Anx)、自闭症谱系障碍(ASD)、双相情感障碍(BD)、重度抑郁症(MDD)和精神分裂症(SCZ)——之间的基因共性程度。我们根据基于美国国立人类基因组研究所(NHGRI)已发表的全基因组关联研究(GWAS)目录的大规模人类基因研究,精心策划了一份经过充分审查的基因列表。基于较低但宽松的GWAS p值(<10^(-5)),共有180个基因被纳入分析。22%的基因在两种或更多疾病中重叠。六种疾病中有五种共有的最广泛的基因子集包括ANK3、AS3MT、CACNA1C、CACNB2、CNNM2、CSMD1、DPCR1、ITIH3、NT5C2、PPP1R11、SYNE1、TCF4、TENM4、TRIM26和ZNRD1。使用一系列神经信息学资源,我们表明许多共享基因与突触后密度(PSD)有关,在免疫组织中表达,并在发育中的人类大脑中共同表达。使用跨物种转化方法,我们检测到六个疾病中每种疾病都共有的两个不同的遗传成分;第一个成分参与中枢神经系统发育、神经投射和突触传递,而第二个成分与各种细胞质细胞器和细胞过程有关。综合起来,这些遗传成分占遗传负荷的20%-30%。其余风险由不同的、疾病特异性的变体赋予。我们对共享和独特遗传因素的系统比较分析突出了关键基因集和分子过程,这些最终可能转化为对这些使人衰弱的疾病的更好诊断和治疗。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7c7f/4222236/124f1c08cb37/fnins-08-00331-g0001.jpg

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