Suppr超能文献

蛋白质NP_344798.1作为Pfam PF06042的首个代表的核磁共振结构测定

NMR structure determination of the protein NP_344798.1 as the first representative of Pfam PF06042.

作者信息

Mohanty Biswaranjan, Serrano Pedro, Geralt Michael, Wüthrich Kurt

机构信息

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, 92037, USA.

出版信息

J Biomol NMR. 2015 Jan;61(1):83-7. doi: 10.1007/s10858-014-9878-3. Epub 2014 Nov 28.

Abstract

We present the NMR structure determination of the protein NP_344798.1, which forms a CCA-adding enzyme head-domain architecture and is the first structural representative of the Pfam protein family PF06042. Its structure can now serve as a template for homology modeling of the other 785 members of this protein family. With 191 residues, NP_344798.1 is the largest single-domain protein structure determined so far with the J-UNIO protocol for automated NMR structure determination. The present work thus also shows that J-UNIO based exclusively on automated projection spectroscopy (APSY) and 3D heteronuclear-resolved [H,H]-NOESY experiments, can successfully be used to obtain high-quality NMR structures of protein domains with up to 200 residues.

摘要

我们展示了蛋白质NP_344798.1的核磁共振(NMR)结构测定结果,该蛋白质形成了一种CCA添加酶头部结构域架构,是Pfam蛋白质家族PF06042的首个结构代表。其结构现在可作为该蛋白质家族其他785个成员同源建模的模板。NP_344798.1有191个残基,是迄今为止使用J-UNIO自动NMR结构测定协议确定的最大的单结构域蛋白质结构。因此,本研究还表明,仅基于自动投影光谱(APSY)和3D异核分辨[H,H]-NOESY实验的J-UNIO,可成功用于获得多达200个残基的蛋白质结构域的高质量NMR结构。

相似文献

1
NMR structure determination of the protein NP_344798.1 as the first representative of Pfam PF06042.
J Biomol NMR. 2015 Jan;61(1):83-7. doi: 10.1007/s10858-014-9878-3. Epub 2014 Nov 28.
2
3
Mechanistic evaluation of a nucleoside tetraphosphate with a thymidylyltransferase.
Biochemistry. 2015 Mar 3;54(8):1703-7. doi: 10.1021/bi501438p. Epub 2015 Feb 16.
4
NMR reveals structural rearrangements associated to substrate insertion in nucleotide-adding enzymes.
Protein Sci. 2016 Apr;25(4):917-25. doi: 10.1002/pro.2872. Epub 2016 Jan 20.
5
NMR assignment of the R2 domain of pneumococcal choline binding protein A (CbpA).
J Biomol NMR. 2005 May;32(1):93. doi: 10.1007/s10858-005-3657-0.
7
Solution structure and function of an essential CMP kinase of Streptococcus pneumoniae.
Protein Sci. 2003 Nov;12(11):2613-21. doi: 10.1110/ps.03256803.
9
Chemical shift assignments of the homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae.
Biomol NMR Assign. 2016 Oct;10(2):341-4. doi: 10.1007/s12104-016-9697-4. Epub 2016 Jul 7.
10
Non-Uniform Sampling and J-UNIO Automation for Efficient Protein NMR Structure Determination.
Chemistry. 2015 Aug 24;21(35):12363-9. doi: 10.1002/chem.201502544. Epub 2015 Jul 28.

引用本文的文献

本文引用的文献

1
Less is more: structures of difficult targets with minimal constraints.
Structure. 2014 Sep 2;22(9):1223-1224. doi: 10.1016/j.str.2014.08.004.
3
NMR-profiles of protein solutions.
Biopolymers. 2013 Nov;99(11):825-31. doi: 10.1002/bip.22348.
4
The J-UNIO protocol for automated protein structure determination by NMR in solution.
J Biomol NMR. 2012 Aug;53(4):341-54. doi: 10.1007/s10858-012-9645-2. Epub 2012 Jul 3.
5
Dali server: conservation mapping in 3D.
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W545-9. doi: 10.1093/nar/gkq366. Epub 2010 May 10.
7
Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme.
EMBO J. 2009 Nov 4;28(21):3353-65. doi: 10.1038/emboj.2009.260. Epub 2009 Sep 10.
8
APSY-NMR with proteins: practical aspects and backbone assignment.
J Biomol NMR. 2008 Nov;42(3):179-95. doi: 10.1007/s10858-008-9266-y. Epub 2008 Oct 8.
9
Automated amino acid side-chain NMR assignment of proteins using (13)C- and (15)N-resolved 3D [ (1)H, (1)H]-NOESY.
J Biomol NMR. 2008 Sep;42(1):23-33. doi: 10.1007/s10858-008-9259-x. Epub 2008 Aug 16.
10
Automated sequence-specific protein NMR assignment using the memetic algorithm MATCH.
J Biomol NMR. 2008 Jul;41(3):127-38. doi: 10.1007/s10858-008-9243-5. Epub 2008 May 30.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验