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[基于基因组的疾病预测面临的方法学挑战]

[Methodological challenges for genome-based prediction of diseases].

作者信息

Foraita Ronja, Jäger M, Pigeot I

机构信息

Leibniz-Institut für Präventionsforschung und Epidemiologie - BIPS, Achterstr. 30, 28359, Bremen, Deutschland,

出版信息

Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz. 2015 Feb;58(2):131-8. doi: 10.1007/s00103-014-2091-4.

Abstract

The rapidly developing genotyping technology has led to the detection of many genetic factors that contribute to the pathogenesis of complex diseases. From this, the aim arose to use these results to offer tailored preventive measures or therapies based on an individual genetic profile. For this purpose, genetic tests are being developed that should allow us to identify individuals who belong to a high risk group with respect to a certain disease due to their genetic predisposition. Such tests are often based on known genetic risk factors that have been identified in genome-wide association studies. Typically, the effect estimates obtained from these studies are further used to construct a genetic risk measure to predict a certain phenotype. This paper describes several statistical and methodological challenges that must be coped with when establishing a genetic prediction model: Starting with the goal to obtain unbiased effect estimates to identify appropriate genetic risk predictors, genetic risk measures must be developed, and the predictive value of a new genetic test must be established. These key requirements of a statistical risk prediction in genetics will be discussed in three sections and finally discussed from a public health perspective.

摘要

快速发展的基因分型技术已促使人们检测出许多导致复杂疾病发病的遗传因素。据此,人们萌生了利用这些结果,根据个体基因概况提供量身定制的预防措施或疗法的想法。为此,正在开发基因检测方法,这些方法应能让我们识别出因遗传易感性而属于某一特定疾病高风险群体的个体。此类检测通常基于在全基因组关联研究中已确定的已知遗传风险因素。通常,从这些研究中获得的效应估计值会进一步用于构建遗传风险指标,以预测某种表型。本文描述了建立遗传预测模型时必须应对的几个统计和方法学挑战:从获得无偏效应估计值以识别合适的遗传风险预测指标这一目标出发,必须开发遗传风险指标,并确定新基因检测的预测价值。遗传学中统计风险预测的这些关键要求将在三个部分进行讨论,最后从公共卫生角度进行探讨。

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