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L-鸟氨酸-L-天冬氨酸振动光谱及分子内氢键相互作用的密度泛函理论(DFT)和自然键轨道(NBO)研究

Density functional theory (DFT) and natural bond orbital (NBO) study of vibrational spectra and intramolecular hydrogen bond interaction of L-ornithine-L-aspartate.

作者信息

Li Linwei, Wu Chengjun, Wang Zhiqiang, Zhao Lixia, Li Zhen, Sun Changshan, Sun Tiemin

机构信息

Key Laboratory of Structure-Based Drug Design and Discovery, Shenyang Pharmaceutical University, Ministry of Education, Shenyang 110016, PR China.

Pharmacy Department, Shenyang Pharmaceutical University, Shenyang 110016, PR China.

出版信息

Spectrochim Acta A Mol Biomol Spectrosc. 2015 Feb 5;136 Pt B:338-46. doi: 10.1016/j.saa.2014.08.153. Epub 2014 Oct 2.

Abstract

In this study, exhaustive conformations of (S)-4-amino-4-carboxybutan-1-aminium (S)-3-amino-3-carboxypropanoate (LOLA) have been scanned. Experimental and theoretical studies on the structure and vibrations of the title compound are presented. The optimized molecular structure, vibrational wavenumbers, Mulliken atomic charges, natural bond orbital (NBO) and molecular electrostatic potential studies have been performed by density functional theory (DFT) using B3LYP method with the 6-311++G(d,p) basis set. Computed X-ray powder diffraction (XRPD) data has been carried out by DFT calculations and ab initio from measured XRPD finding. The LOLA molecular geometry has been determined which exists in the form of salt by intramolecular H-bonds and ionic bonding. Moreover, calculated vibrational frequencies were applied to simulate IR and Raman spectra of the title compound which showed excellent agreement with observed spectra. Reliable vibrational assignments have been made on the basis of potential energy distribution (PED) and 0.992 has been obtained by least squares method which is the uniform scaled factor for theoretical frequencies at 6-311++G(d,p) basis set. In addition, the hydrogen bonding in LOLA molecule has been explored by calculation of the hyperconjugative charge transfer interaction on [LP X-σ(*)(Y-H)], under NBO analysis, Mulliken atomic charge analysis, molecular electrostatic potential map (MEP) and vibrational spectra. Finally, HOMO-LUMO of the title compound has been plotted for predicting reactive sites.

摘要

在本研究中,对(S)-4-氨基-4-羧基丁烷-1-铵(S)-3-氨基-3-羧基丙酸酯(LOLA)的所有构象进行了扫描。给出了对该标题化合物的结构和振动的实验与理论研究。采用密度泛函理论(DFT)中的B3LYP方法和6-311++G(d,p)基组,进行了优化的分子结构、振动波数、穆利肯原子电荷、自然键轨道(NBO)和分子静电势研究。通过DFT计算和基于实测X射线粉末衍射(XRPD)结果的从头计算得出了计算的XRPD数据。确定了LOLA的分子几何结构,其以盐的形式通过分子内氢键和离子键存在。此外,将计算得到的振动频率用于模拟该标题化合物的红外和拉曼光谱,结果与观测光谱显示出极好的一致性。基于势能分布(PED)进行了可靠的振动归属,通过最小二乘法得到了0.992,这是6-311++G(d,p)基组下理论频率的统一缩放因子。此外,通过在NBO分析、穆利肯原子电荷分析、分子静电势图(MEP)和振动光谱下对[LP X-σ*(Y-H)]上的超共轭电荷转移相互作用进行计算,探索了LOLA分子中的氢键。最后,绘制了该标题化合物的最高占据分子轨道-最低未占据分子轨道(HOMO-LUMO)以预测反应位点。

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