Huang Yu Chuan, Yu Hua-Zhong, Sen Dipankar
Department of Molecular Biology & Biochemistry, Simon Fraser University, Burnaby, B C V5A 1S6, Canada.
Department of Chemistry, Simon Fraser University, Burnaby, British Columbia, V5A 1S6, Canada.
Biopolymers. 2015 Aug;103(8):460-8. doi: 10.1002/bip.22595.
DNAs and RNAs that fold via the formation of guanine quartets form G-quadruplexes that are often highly diverse in terms of architecture and topology. G-quadruplexes are specifically stabilized by metal cations such as K(+) and Sr(2+), but not Li(+). DNA duplexes that incorporate two separated clusters of G•G mismatches ("P-duplexes") can function as electronic switches, capable of toggling reversibly from a poorly conductive conformer (E) with only Li(+) in the solution to a G-quadruplex incorporating conformer of higher conductivity (C) in the presence of K(+). Herein, we report results from fluorescence energy transfer, circular dichroism, charge conduction, and chemical footprinting experiments, which cumulatively demonstrate that P-duplex E↔C transitions are genuinely mechatronic, with causally coupled mechanical and electronic states. We show, further, that the K(+) - and the Sr(2+)-fuelled E↔C switching of a given P-duplex are structurally, topologically, and electronically distinct from each other. A single DNA P-duplex can thus exist in at least three distinguishable mechatronic states in aqueous solution.