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尿囊素分子及其氢键二聚体的傅里叶变换红外光谱、傅里叶变换拉曼光谱、紫外可见光谱和量子化学计算

FTIR, FT-Raman, UV-Visible spectra and quantum chemical calculations of allantoin molecule and its hydrogen bonded dimers.

作者信息

Alam Mohammad Jane, Ahmad Shabbir

机构信息

Department of Physics, Aligarh Muslim University, Aligarh 202002, India.

Department of Physics, Aligarh Muslim University, Aligarh 202002, India.

出版信息

Spectrochim Acta A Mol Biomol Spectrosc. 2015 Feb 5;136 Pt B:961-78. doi: 10.1016/j.saa.2014.09.119. Epub 2014 Oct 5.

DOI:10.1016/j.saa.2014.09.119
PMID:25459622
Abstract

FTIR, FT-Raman and electronic spectra of allantoin molecule are recorded and investigated using DFT and MP2 methods with 6-311++G(d,p) basis set. The molecular structure, anharmonic vibrational spectra, natural atomic charges, non-linear optical properties, etc. have been computed for the ground state of allantoin. The anharmonic vibrational frequencies are calculated using PT2 algorithm (Barone method) as well as VSCF and CC-VSCF methods. These methods yield results that are in remarkable agreement with the experiment. The coupling strengths between pairs of modes are also calculated using coupling integral based on 2MR-QFF approximation. The simulations on allantoin dimers have been also performed at B3LYP/6-311++G(d,p) level of theory to investigate the effect of the intermolecular interactions on the molecular structure and vibrational frequencies of the monomer. Vibrational assignments are made with the great accuracy using PED calculations and animated modes. The combination and overtone bands have been also identified in the FTIR spectrum with the help of anharmonic computations. The electronic spectra are simulated in gas and solution at TD-B3LYP/6-311++G(d,p) level of theory. The important global quantities such as electro-negativity, electronic chemical potential, electrophilicity index, chemical hardness and softness based on HOMO, LUMO energy eigenvalues are also computed. NBO analysis has been performed for monomer and dimers of allantoin at B3LYP/6-311++G(d,p) level of theory.

摘要

记录并使用含6 - 311++G(d,p)基组的DFT和MP2方法研究了尿囊素分子的傅里叶变换红外光谱(FTIR)、傅里叶变换拉曼光谱(FT - Raman)和电子光谱。计算了尿囊素基态的分子结构、非谐振动光谱、自然原子电荷、非线性光学性质等。使用PT2算法(巴罗内方法)以及VSCF和CC - VSCF方法计算非谐振动频率。这些方法得出的结果与实验结果非常吻合。还使用基于2MR - QFF近似的耦合积分计算了模式对之间的耦合强度。在B3LYP/6 - 311++G(d,p)理论水平上对尿囊素二聚体进行了模拟,以研究分子间相互作用对单体分子结构和振动频率的影响。使用势能分布(PED)计算和动画模式非常精确地进行了振动归属。借助非谐计算在FTIR光谱中也识别出了组合带和泛频带。在TD - B3LYP/6 - 311++G(d,p)理论水平上模拟了气体和溶液中的电子光谱。还基于HOMO、LUMO能量本征值计算了诸如电负性、电子化学势、亲电性指数、化学硬度和软度等重要的全局量。在B3LYP/6 - 311++G(d,p)理论水平上对尿囊素的单体和二聚体进行了自然键轨道(NBO)分析。

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