Suppr超能文献

Tcra/Tcrd基因座V基因片段启动子对Vδ和Vα使用的特异性

Specification of Vδ and Vα usage by Tcra/Tcrd locus V gene segment promoters.

作者信息

Naik Abani Kanta, Hawwari Abbas, Krangel Michael S

机构信息

Department of Immunology, Duke University Medical Center, Durham, NC 27710; and.

Department of Genetics, King Faisal Specialist Hospital & Research Centre, Riyadh 11211, Saudi Arabia

出版信息

J Immunol. 2015 Jan 15;194(2):790-4. doi: 10.4049/jimmunol.1402423. Epub 2014 Dec 3.

Abstract

The Tcra/Tcrd locus undergoes V-Dδ-Jδ rearrangement in CD4(-)CD8(-) thymocytes to form the TCRδ chain of the γδ TCR and V-Jα rearrangement in CD4(+)CD8(+) thymocytes to form the TCRα-chain of the αβ TCR. Most V segments in the locus participate in V-Jα rearrangement, but only a small and partially overlapping subset participates in V-Dδ-Jδ rearrangement. What specifies any particular Tcra/Tcrd locus V gene segment as a Vδ, a Vα, or both is currently unknown. We tested the hypothesis that V segment usage is specified by V segment promoter-dependent chromatin accessibility in developing thymocytes. TRAV15/DV6 family V gene segments contribute to both the Tcrd and the Tcra repertoires, whereas TRAV12 family V gene segments contribute almost exclusively to the Tcra repertoire. To understand whether the TRAV15/DV6 promoter region specifies TRAV15/DV6 as a Vδ, we used gene targeting to replace the promoter region of a TRAV12 family member with one from a TRAV15/DV6 family member. The TRAV15/DV6 promoter region conferred increased germline transcription and histone modifications to TRAV12 in double-negative thymocytes and caused a substantial increase in usage of TRAV12 in Tcrd recombination events. Our results demonstrate that usage of TRAV15/DV6 family V gene segments for Tcrd recombination in double-negative thymocytes is regulated, at least in part, by intrinsic features of TRAV15/DV6 promoters, and argue that Tcra/Tcrd locus Vδ gene segments are defined by their local chromatin accessibility in CD4(-)CD8(-) thymocytes.

摘要

Tcra/Tcrd基因座在CD4(-)CD8(-)胸腺细胞中经历V-Dδ-Jδ重排,以形成γδ TCR的TCRδ链;在CD4(+)CD8(+)胸腺细胞中经历V-Jα重排,以形成αβ TCR的TCRα链。该基因座中的大多数V区段参与V-Jα重排,但只有一小部分且部分重叠的亚群参与V-Dδ-Jδ重排。目前尚不清楚是什么将任何特定的Tcra/Tcrd基因座V基因区段指定为Vδ、Vα或两者皆是。我们测试了这样一种假说,即V区段的使用是由发育中的胸腺细胞中V区段启动子依赖性染色质可及性所决定的。TRAV15/DV6家族V基因区段对Tcrd和Tcra库均有贡献,而TRAV12家族V基因区段几乎只对Tcra库有贡献。为了了解TRAV15/DV6启动子区域是否将TRAV15/DV6指定为Vδ,我们使用基因靶向技术,用TRAV15/DV6家族成员的启动子区域替换TRAV12家族成员的启动子区域。TRAV15/DV6启动子区域在双阴性胸腺细胞中赋予TRAV12更高的种系转录和组蛋白修饰,并导致TRAV12在Tcrd重组事件中的使用显著增加。我们的结果表明,双阴性胸腺细胞中用于Tcrd重组的TRAV15/DV6家族V基因区段的使用至少部分受TRAV15/DV6启动子的内在特征调控,并表明Tcra/Tcrd基因座Vδ基因区段是由它们在CD4(-)CD8(-)胸腺细胞中的局部染色质可及性所定义的。

相似文献

1
Specification of Vδ and Vα usage by Tcra/Tcrd locus V gene segment promoters.
J Immunol. 2015 Jan 15;194(2):790-4. doi: 10.4049/jimmunol.1402423. Epub 2014 Dec 3.
2
Trav15-dv6 family Tcrd rearrangements diversify the Tcra repertoire.
J Exp Med. 2022 Feb 7;219(2). doi: 10.1084/jem.20211581. Epub 2021 Dec 15.
3
Tcrd Rearrangement Redirects a Processive Tcra Recombination Program to Expand the Tcra Repertoire.
Cell Rep. 2017 Jun 6;19(10):2157-2173. doi: 10.1016/j.celrep.2017.05.045.
5
Long-distance regulation of fetal V(δ) gene segment TRDV4 by the Tcrd enhancer.
J Immunol. 2011 Sep 1;187(5):2484-91. doi: 10.4049/jimmunol.1100468. Epub 2011 Jul 22.
7
A discrete chromatin loop in the mouse Tcra-Tcrd locus shapes the TCRδ and TCRα repertoires.
Nat Immunol. 2015 Oct;16(10):1085-93. doi: 10.1038/ni.3232. Epub 2015 Aug 10.
8
Chromatin Dynamics and the Development of the TCRα and TCRδ Repertoires.
Adv Immunol. 2015;128:307-61. doi: 10.1016/bs.ai.2015.07.005. Epub 2015 Aug 15.
9
Distinct contracted conformations of the Tcra/Tcrd locus during Tcra and Tcrd recombination.
J Exp Med. 2010 Aug 30;207(9):1835-41. doi: 10.1084/jem.20100772. Epub 2010 Aug 9.
10
Tcra gene recombination is supported by a Tcra enhancer- and CTCF-dependent chromatin hub.
Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):E3493-502. doi: 10.1073/pnas.1214131109. Epub 2012 Nov 19.

引用本文的文献

1
Identification of TRDV-TRAJ V domains in human and mouse T-cell receptor repertoires.
Front Immunol. 2023 Nov 23;14:1286688. doi: 10.3389/fimmu.2023.1286688. eCollection 2023.
2
Tnpo3 controls splicing of the pre-mRNA encoding the canonical TCR α chain of iNKT cells.
Nat Commun. 2023 Jun 20;14(1):3645. doi: 10.1038/s41467-023-39422-4.
3
Direct regulation of TCR rearrangement and expression by E proteins during early T cell development.
WIREs Mech Dis. 2022 Nov;14(6):e1578. doi: 10.1002/wsbm.1578. Epub 2022 Jul 18.
4
Trav15-dv6 family Tcrd rearrangements diversify the Tcra repertoire.
J Exp Med. 2022 Feb 7;219(2). doi: 10.1084/jem.20211581. Epub 2021 Dec 15.
5
Abortive γδTCR rearrangements suggest ILC2s are derived from T-cell precursors.
Blood Adv. 2020 Nov 10;4(21):5362-5372. doi: 10.1182/bloodadvances.2020002758.
6
Selected before selection: A case for inherent antigen bias in the T cell receptor repertoire.
Curr Opin Syst Biol. 2019 Dec;18:36-43. doi: 10.1016/j.coisb.2019.10.007. Epub 2019 Nov 6.
7
On the organization of human T-cell receptor loci: log-periodic distribution of T-cell receptor gene segments.
J R Soc Interface. 2016 Jan;13(114):20150911. doi: 10.1098/rsif.2015.0911.
8
Long-Range Regulation of V(D)J Recombination.
Adv Immunol. 2015;128:123-82. doi: 10.1016/bs.ai.2015.07.003. Epub 2015 Aug 20.

本文引用的文献

1
Unifying model for molecular determinants of the preselection Vβ repertoire.
Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):E3206-15. doi: 10.1073/pnas.1304048110. Epub 2013 Aug 5.
2
Deep sequencing of the murine IgH repertoire reveals complex regulation of nonrandom V gene rearrangement frequencies.
J Immunol. 2013 Sep 1;191(5):2393-402. doi: 10.4049/jimmunol.1301279. Epub 2013 Jul 29.
3
Tcra gene recombination is supported by a Tcra enhancer- and CTCF-dependent chromatin hub.
Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):E3493-502. doi: 10.1073/pnas.1214131109. Epub 2012 Nov 19.
4
Regulation of TCRβ allelic exclusion by gene segment proximity and accessibility.
J Immunol. 2011 Dec 15;187(12):6374-81. doi: 10.4049/jimmunol.1102611. Epub 2011 Nov 11.
5
V(D)J recombination: mechanisms of initiation.
Annu Rev Genet. 2011;45:167-202. doi: 10.1146/annurev-genet-110410-132552. Epub 2011 Aug 19.
6
A role for cohesin in T-cell-receptor rearrangement and thymocyte differentiation.
Nature. 2011 Aug 10;476(7361):467-71. doi: 10.1038/nature10312.
7
Long-distance regulation of fetal V(δ) gene segment TRDV4 by the Tcrd enhancer.
J Immunol. 2011 Sep 1;187(5):2484-91. doi: 10.4049/jimmunol.1100468. Epub 2011 Jul 22.
8
Distinct contracted conformations of the Tcra/Tcrd locus during Tcra and Tcrd recombination.
J Exp Med. 2010 Aug 30;207(9):1835-41. doi: 10.1084/jem.20100772. Epub 2010 Aug 9.
9
Differential utilization of T cell receptor TCR alpha/TCR delta locus variable region gene segments is mediated by accessibility.
Proc Natl Acad Sci U S A. 2009 Oct 13;106(41):17487-92. doi: 10.1073/pnas.0909723106. Epub 2009 Sep 28.
10
Germline transcription: a key regulator of accessibility and recombination.
Adv Exp Med Biol. 2009;650:93-102. doi: 10.1007/978-1-4419-0296-2_8.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验