Sergeyev Ivan V, Bahri Salima, Day Loren A, McDermott Ann E
Department of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, USA.
Public Health Research Institute, Rutgers University, 225 Warren St., Newark, New Jersey 07103, USA.
J Chem Phys. 2014 Dec 14;141(22):22D533. doi: 10.1063/1.4903230.
High resolution two- and three-dimensional heteronuclear correlation spectroscopy ((1)H-(13)C, (1)H-(15)N, and (1)H-(13)C-(13)C HETCOR) has provided a detailed characterization of the internal and external hydration water of the Pf1 virion. This long and slender virion (2000 nm × 7 nm) contains highly stretched DNA within a capsid of small protein subunits, each only 46 amino acid residues. HETCOR cross-peaks have been unambiguously assigned to 25 amino acids, including most external residues 1-21 as well as residues 39-40 and 43-46 deep inside the virion. In addition, the deoxyribose rings of the DNA near the virion axis are in contact with water. The sets of cross-peaks to the DNA and to all 25 amino acid residues were from the same hydration water (1)H resonance; some of the assigned residues do not have exchangeable side-chain protons. A mapping of the contacts onto structural models indicates the presence of water "tunnels" through a highly hydrophobic region of the capsid. The present results significantly extend and modify results from a lower resolution study, and yield a comprehensive hydration surface map of Pf1. In addition, the internal water could be distinguished from external hydration water by means of paramagnetic relaxation enhancement. The internal water population may serve as a conveniently localized magnetization reservoir for structural studies.
高分辨率二维和三维异核相关光谱法((1)H-(13)C、(1)H-(15)N以及(1)H-(13)C-(13)C异核相关光谱法)已对Pf1病毒粒子的内部和外部水化水进行了详细表征。这种长而细的病毒粒子(2000纳米×7纳米)在由小蛋白质亚基组成的衣壳内含有高度伸展的DNA,每个亚基只有46个氨基酸残基。异核相关光谱法的交叉峰已明确归属到25个氨基酸上,包括大多数外部残基1 - 21以及病毒粒子内部深处的残基39 - 40和43 - 46。此外,靠近病毒粒子轴的DNA的脱氧核糖环与水接触。与DNA以及所有25个氨基酸残基的交叉峰组来自同一水化水(1)H共振;一些已归属的残基没有可交换的侧链质子。将这些接触关系映射到结构模型上表明,在衣壳的高度疏水区域存在水“通道”。目前的结果显著扩展并修正了低分辨率研究的结果,得出了Pf1完整的水化表面图谱。此外,可通过顺磁弛豫增强区分内部水和外部水化水。内部水群体可作为结构研究中方便定位的磁化源。