Centre of Biomedical Magnetic Resonance, SGPGIMS Campus, Raibareli Road, Lucknow 226014, India.
J Phys Chem B. 2013 Mar 14;117(10):2837-40. doi: 10.1021/jp310921n. Epub 2013 Mar 1.
Water plays a major structural and functional role around proteins. In an attempt to explore this mechanistic structural aspect of proteins, we present site-specific interaction of hydration water with the major coat protein subunit of filamentous virus Pf1 by magic angle spinning (MAS) solid-state NMR. The interaction of surrounding water with 36 MDa Pf1 virion is investigated in uniformly (13)C, (15)N isotopically labeled; polyethylene glycol precipitated fully hydrated samples by solid-state nuclear magnetic resonance spectroscopy. Dipolar edited two-dimensional (2D) (1)H-(15)N heteronuclear correlation (HETCOR) experiments lead to unambiguous assignments of cross-peaks originating exclusively from (1)H resonances of water molecules correlating to the protein amide nitrogen. An enhanced resolved (1)H chemical shift dimension in these experiments also precludes the need of perdeuteration. We report seven residues spanning the 40-residue continuous α-helical conformation assembly of Pf1 interacting with surrounding water. It shows a highly hydrated inner core inside this viral filamentous assembly. The results obtained also suggest the first evidence of a water-mediated interface cluster formed at the site of Arg44 with the single-stranded DNA genome of the filamentous phage supramolecular assembly.
水在蛋白质周围发挥着主要的结构和功能作用。为了探索蛋白质这种机械结构方面的特性,我们采用魔角旋转(MAS)固态 NMR 研究了丝状病毒 Pf1 的主要外壳蛋白亚基与水的特定位置相互作用。通过固态核磁共振光谱法,我们研究了在均匀(13)C、(15)N 同位素标记的;聚乙二醇沉淀的完全水合样品中,周围水与 36 MDa Pf1 病毒粒子的相互作用。偶极编辑二维(2D)(1)H-(15)N 异核相关(HETCOR)实验导致仅来自与蛋白质酰胺氮相关的水分子(1)H 共振的交叉峰的明确分配。这些实验中增强的分辨(1)H 化学位移维度也排除了需要氘代的必要性。我们报告了跨越 Pf1 的 40 个连续α-螺旋构象组装的七个残基与周围水相互作用。这表明在这个病毒丝状组装体的内部有一个高度水合的核心。所得结果还表明了在丝状噬菌体超分子组装体的 Arg44 位点处形成的水介导界面簇的第一个证据。