Andreoni Chiara, Orsi Gianni, De Maria Carmelo, Montemurro Francesca, Vozzi Giovanni
Research Center "E. Piaggio", University of Pisa, Pisa, Italy.
Research Center "E. Piaggio", University of Pisa, Pisa, Italy; Department of Information Engineering, University of Pisa, Pisa, Italy.
PLoS One. 2014 Dec 15;9(12):e111946. doi: 10.1371/journal.pone.0111946. eCollection 2014.
The biochemistry of a system made up of three kinds of cell is virtually impossible to work out without the use of in silico models. Here, we deal with homeostatic balance phenomena from a metabolic point of view and we present a new computational model merging three single-cell models, already available from our research group: the first model reproduced the metabolic behaviour of a hepatocyte, the second one represented an endothelial cell, and the third one described an adipocyte. Multiple interconnections were created among these three models in order to mimic the main physiological interactions that are known for the examined cell phenotypes. The ultimate aim was to recreate the accomplishment of the homeostatic balance as it was observed for an in vitro connected three-culture system concerning glucose and lipid metabolism in the presence of the medium flow. The whole model was based on a modular approach and on a set of nonlinear differential equations implemented in Simulink, applying Michaelis-Menten kinetic laws and some energy balance considerations to the studied metabolic pathways. Our in silico model was then validated against experimental datasets coming from literature about the cited in vitro model. The agreement between simulated and experimental results was good and the behaviour of the connected culture system was reproduced through an adequate parameter evaluation. The developed model may help other researchers to investigate further about integrated metabolism and the regulation mechanisms underlying the physiological homeostasis.
如果不使用计算机模拟模型,由三种细胞组成的系统的生物化学几乎是无法研究清楚的。在此,我们从代谢的角度探讨稳态平衡现象,并提出一种新的计算模型,该模型融合了我们研究团队已有的三个单细胞模型:第一个模型再现了肝细胞的代谢行为,第二个模型代表内皮细胞,第三个模型描述了脂肪细胞。在这三个模型之间建立了多个相互连接,以模拟所研究细胞表型已知的主要生理相互作用。最终目标是重现稳态平衡的实现过程,就如同在存在培养基流动的情况下,对体外连接的三培养系统中葡萄糖和脂质代谢所观察到的那样。整个模型基于模块化方法以及在Simulink中实现的一组非线性微分方程,将米氏动力学定律和一些能量平衡考虑因素应用于所研究的代谢途径。然后,我们的计算机模拟模型针对来自有关上述体外模型的文献的实验数据集进行了验证。模拟结果与实验结果之间的一致性良好,并且通过适当的参数评估再现了连接培养系统的行为。所开发的模型可能有助于其他研究人员进一步研究整合代谢以及生理稳态背后的调节机制。